add a workaround for artiq6 on kasli 2.0.2

Signed-off-by: Egor Savkin <es@m-labs.hk>

README.md

@@ -2,7 +2,7 @@
 
 Repository with instructions and remarks on assembling and testing Sinara hardware
 
-### Build docs
+## Build docs
 
 ```shell
 nix build
@@ -17,7 +17,19 @@ nix develop
 mdbook build
 ```
 
-The output files are in `book` directory.
+The output files will be in `book` directory.
+
+### Alternative way
+
+Since the docs builder depends only on mdBook, you may get it from anywhere you like - `nix-shell -p mdbook`,
+`snap install mdbook`, `cargo install mdbook` or any other from your OS.
+After that you will be able to do:
+
+```shell
+mdbook build
+```
+
+The output files will be in `book` directory.
 
 ## Contributing
 
@@ -28,12 +40,21 @@ Tips for adding hardware instructions:
 
 1. Compose a chapter in a new Markdown file in `src/hw`
 2. Add pictures if needed, store them in `src/img`, assure them to be clear, informative and compressed
-   (you can use `convert <INPUT IMAGE> -quality 80% -resize <width>x<height> <OUTPUT IMAGE>` for optimizing JPEG image 
+   (you can use `convert <INPUT IMAGE> -quality 80% -resize <width>x<height> <OUTPUT IMAGE>` for optimizing JPEG image
    or `convert <INPUT IMAGE> -quality 80% -resize <width>x<height> -background white -alpha remove -alpha off <OUTPUT IMAGE>`
    for images with transparent background)
 3. Add link to the new chapter to the `src/SUMMARY.md`
 4. Do not forget to tell about all hidden/non-obvious obstacles and pitfalls
-5. Add testing steps, even the "obvious" ones
-6. Add JSON sample if needed
-7. Add hardware setup (e.g. pins, switches) steps if needed
-8. View changed and added pages with `mdbook build` (see building instructions above)
+5. Avoid using uncommon, complex, or hard-to-understand words, phrases, or grammar (e.g., ❌constituent -> ✔️component).
+   Keep in mind that these guides may be used by people with different backgrounds and levels of English proficiency.
+6. Add testing steps, even the "obvious" ones
+7. Add JSON sample if needed
+8. Add hardware setup (e.g. pins, switches) steps if needed
+9. View changed and added pages with `mdbook build` (see building instructions above)
+10. Check your contributions with linter:
+
+    ```shell
+    nix-shell -p nodejs
+    npm install
+    npx markdownlint-cli2 "src/**/*.md" --fix
+    ```

flake.lock

@@ -2,16 +2,16 @@
   "nodes": {
     "nixpkgs": {
       "locked": {
-        "lastModified": 1697851979,
-        "narHash": "sha256-lJ8k4qkkwdvi+t/Xc6Fn74kUuobpu9ynPGxNZR6OwoA=",
+        "lastModified": 1728909085,
+        "narHash": "sha256-WLxED18lodtQiayIPDE5zwAfkPJSjHJ35UhZ8h3cJUg=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "5550a85a087c04ddcace7f892b0bdc9d8bb080c8",
+        "rev": "c0b1da36f7c34a7146501f684e9ebdf15d2bebf8",
         "type": "github"
       },
       "original": {
         "owner": "NixOS",
-        "ref": "nixos-23.05",
+        "ref": "nixos-24.05",
         "repo": "nixpkgs",
         "type": "github"
       }

flake.nix

@@ -1,7 +1,7 @@
 {
     description = "Sinara assembly and test instructions";
 
-    inputs.nixpkgs.url = github:NixOS/nixpkgs/nixos-23.05;
+    inputs.nixpkgs.url = github:NixOS/nixpkgs/nixos-24.05;
 
     outputs = { self, nixpkgs }:
 
@@ -20,7 +20,7 @@
         };
     devShell.x86_64-linux = pkgs.mkShell {
             name = "sinara-assembly-dev-shell";
-            buildInputs = with pkgs; [pkgs.mdbook];
+            buildInputs = with pkgs; [ pkgs.mdbook pkgs.nodejs ];
         };
 
     };

package-lock.json

@@ -0,0 +1,460 @@
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+      "version": "1.0.4",
+      "resolved": "https://registry.npmjs.org/reusify/-/reusify-1.0.4.tgz",
+      "integrity": "sha512-U9nH88a3fc/ekCF1l0/UP1IosiuIjyTh7hBvXVMHYgVcfGvt897Xguj2UOLDeI5BG2m7/uwyaLVT6fbtCwTyzw==",
+      "dev": true,
+      "engines": {
+        "iojs": ">=1.0.0",
+        "node": ">=0.10.0"
+      }
+    },
+    "node_modules/run-parallel": {
+      "version": "1.2.0",
+      "resolved": "https://registry.npmjs.org/run-parallel/-/run-parallel-1.2.0.tgz",
+      "integrity": "sha512-5l4VyZR86LZ/lDxZTR6jqL8AFE2S0IFLMP26AbjsLVADxHdhB/c0GUsH+y39UfCi3dzz8OlQuPmnaJOMoDHQBA==",
+      "dev": true,
+      "funding": [
+        {
+          "type": "github",
+          "url": "https://github.com/sponsors/feross"
+        },
+        {
+          "type": "patreon",
+          "url": "https://www.patreon.com/feross"
+        },
+        {
+          "type": "consulting",
+          "url": "https://feross.org/support"
+        }
+      ],
+      "dependencies": {
+        "queue-microtask": "^1.2.2"
+      }
+    },
+    "node_modules/slash": {
+      "version": "5.1.0",
+      "resolved": "https://registry.npmjs.org/slash/-/slash-5.1.0.tgz",
+      "integrity": "sha512-ZA6oR3T/pEyuqwMgAKT0/hAv8oAXckzbkmR0UkUosQ+Mc4RxGoJkRmwHgHufaenlyAgE1Mxgpdcrf75y6XcnDg==",
+      "dev": true,
+      "engines": {
+        "node": ">=14.16"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
+    "node_modules/to-regex-range": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/to-regex-range/-/to-regex-range-5.0.1.tgz",
+      "integrity": "sha512-65P7iz6X5yEr1cwcgvQxbbIw7Uk3gOy5dIdtZ4rDveLqhrdJP+Li/Hx6tyK0NEb+2GCyneCMJiGqrADCSNk8sQ==",
+      "dev": true,
+      "dependencies": {
+        "is-number": "^7.0.0"
+      },
+      "engines": {
+        "node": ">=8.0"
+      }
+    },
+    "node_modules/uc.micro": {
+      "version": "2.1.0",
+      "resolved": "https://registry.npmjs.org/uc.micro/-/uc.micro-2.1.0.tgz",
+      "integrity": "sha512-ARDJmphmdvUk6Glw7y9DQ2bFkKBHwQHLi2lsaH6PPmz/Ka9sFOBsBluozhDltWmnv9u/cF6Rt87znRTPV+yp/A==",
+      "dev": true
+    },
+    "node_modules/unicorn-magic": {
+      "version": "0.1.0",
+      "resolved": "https://registry.npmjs.org/unicorn-magic/-/unicorn-magic-0.1.0.tgz",
+      "integrity": "sha512-lRfVq8fE8gz6QMBuDM6a+LO3IAzTi05H6gCVaUpir2E1Rwpo4ZUog45KpNXKC/Mn3Yb9UDuHumeFTo9iV/D9FQ==",
+      "dev": true,
+      "engines": {
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    }
+  }
+}

package.json

@@ -0,0 +1,13 @@
+{
+  "devDependencies": {
+    "markdownlint-cli2": "^0.14.0"
+  },
+  "markdownlint-cli2": {
+    "config": {
+      "line_length": {
+        "line_length": 120,
+        "code_blocks": false
+      }
+    }
+  }
+}

src/SUMMARY.md

@@ -2,6 +2,7 @@
 
 - [Build and test firmware](./build_test_firmware.md)
 - [Hardware](./hw/hardware.md)
+  - [Sinara Kasli](./hw/kasli.md)
   - [Sinara Kasli-SOC](./hw/kasli_soc.md)
   - [Sinara 4624 AWG Phaser (Upconverter/Baseband)](./hw/phaser.md)
   - [Sinara 4456 synthesizer Mirny / Sinara 4457 Almazny Mezzanine card](./hw/mirny_almazny.md)
@@ -9,6 +10,7 @@
   - [Sinara 2118 BNC-TTL / 2128 SMA-TTL](./hw/bnc_sma_ttl.md)
   - [Sinara 2138 MCX-TTL](./hw/mcx_ttl.md)
   - [Sinara 5432 DAC Zotino / Sinara 5632 DAC Fastino](./hw/zotino_fastino.md)
+  - [Sinara 5716 DAC Shuttler](./hw/shuttler.md)
   - [Sinara 5518 BNC-IDC / 5528 SMA-IDC adapter](./hw/bnc_sma_idc_adapter.md)
   - [Sinara 4410/4412 DDS Urukul (AD9910/AD9912)](./hw/urukul.md)
   - [Sinara 5108 Sampler](./hw/sampler.md)
@@ -17,10 +19,17 @@
   - [Sinara 8452 DSP Stabilizer](./hw/stabilizer.md)
   - [Sinara 9805 RF Power Amplifier Booster](./hw/booster.md)
   - [Sinara 8451 Thermostat](./hw/thermostat.md)
+  - [Sinara 2245 LVDS DIO](./hw/lvds_dio.md)
 - [Software/Support](./sw_sup/software_support.md)
+  - [Starting with ARTIQ](./sw_sup/artiq_start.md)
   - [Building legacy firmware](./sw_sup/artiq_legacy.md)
   - [Networking](./sw_sup/networking.md)
   - [DRTIO](./sw_sup/drtio.md)
   - [UART Logs](./sw_sup/uart_logs.md)
   - [Flashing the Firmware](./sw_sup/flashing_firmware.md)
   - [Moninj](./sw_sup/moninj.md)
+  - [Clocking](sw_sup/clocking.md)
+  - [device_db.py](sw_sup/device_db.md)
+  - [Setup your PC for building ARTIQ firmware](sw_sup/setup_build_pc.md)
+  - [AFWS client](sw_sup/afws_client.md)
+  - [Integration with PyCharm](sw_sup/pycharm.md)

src/build_test_firmware.md

@@ -5,41 +5,57 @@
 * 😡 **Always** use grounding strap during dis/assembly or other cards' physical operation
 * 😡 **Always** power off devices before un/plugging
 * 🧐 If needed to power-cycle the crate, wait at least 30 seconds before turning them on
-* 🙅 Avoid the boards touching conductive materials - wires, metals. Use at 
+* 🙅 Avoid the boards touching conductive materials - wires, metals. Use at
   least plastic ESD bags if you need the cards to be put at the desk or any other surface.
 * 💁 Be gentle to the EEM ports and any other connectors. Support them when plugging, hold when unplugging
-* 🙆 If you need to take the cards out, take them out one-by-one from the end, unplug EEM and cables if you feel high tension
+* 🙆 If you need to take the cards out, take them out one-by-one from the end, unplug EEM and cables
+  if you feel high tension
 * 🙆 Use dedicated power supplies for each crate, preferably given or equivalent to given by us
 * 🙅 Avoid unnecessary inserts and pullouts, especially of MMCX cables
 
 Failure to comply with this voids the warranty.
 
+## Shipping hints and warnings
+
+* 🙆 Leave the cards in the crate
+* 🙆 Ensure screws are tight
+* 🙆 Ensure cards are in card guides
+* ⚠️ Remove any cables from front panels
+* ⚠️ Remove SFP adapters and insert caps/stubs
+* 💁 Also advised to put caps on SMA connectors
+* ✅ Wrap each crate in the bubble wrap individually until you don't feel the edges of the crate
+  (usually 10 layers of standard buble wrap)
+* 🈁 Fill in the space around the crate in the box with foamy stuff
+
 ## Kasli standalone
 
-### Checklist
+### Checklist for Kasli
 
 1. Build firmware (see commands below)
 2. Flash firmware and settings
 3. Test hardware with the PSU, which is going to be shipped
 4. Create a flash-drive with `device_db.py` file for customers (FAT32)
 
-### CLI commands - build and flash
+### CLI commands - build and flash for Kasli
 
 ```shell
 mkdir <variant>
 cd <variant>/
-nix develop github:m-labs/artiq\?ref=release-7
+nix develop github:m-labs/artiq\?ref=release-8#boards
 # master/standalone only
-artiq_mkfs -s ip 192.168.1.75 kasli.config
+artiq_mkfs -s ip 192.168.1.75/24 kasli.config
 artiq_flash storage -f kasli.config
 artiq_ddb_template -o device_db.py <variant>.json 
-python -m artiq.gateware.targets.kasli_generic <variant>.json 
+python -m artiq.gateware.targets.kasli <variant>.json 
 artiq_flash --srcbuild -d artiq_kasli/<variant>/
+artiq_rtiomap dev_map.bin
+artiq_coremgmt config write -f device_map dev_map.bin
+artiq_coremgmt reboot
 ```
 
 ## Kasli-SoC (zynq)
 
-### Checklist
+### Checklist for Kasli-SoC
 
 1. Build firmware (see commands below) for SD card variant
 2. Copy `results/boot.bin` to the SD card
@@ -49,44 +65,47 @@ artiq_flash --srcbuild -d artiq_kasli/<variant>/
 6. Test hardware with the PSU, which is going to be shipped
 7. Create a flash-drive with `device_db.py` file for customers (FAT32)
 
-### CLI commands - build and flash
+### CLI commands - build and flash for Kasli-SoC
 
 ```shell
 mkdir <variant>
 cd <variant>/
-nix develop git+https://git.m-labs.hk/m-labs/artiq-zynq\?ref=release-7
+nix develop git+https://git.m-labs.hk/m-labs/artiq-zynq\?ref=release-8
 artiq_ddb_template -o device_db.py <variant>.json 
-nix build -L --impure --expr 'let fl = builtins.getFlake "git+https://git.m-labs.hk/m-labs/artiq-zynq?ref=release-7"; in (fl.makeArtiqZynqPackage {target="kasli_soc"; variant="[master, standalone, satellite]"; json=<full path to the json description>;}).kasli_soc-[master, standalone, satellite]-sd' 
+nix build -L --impure --expr 'let fl = builtins.getFlake "git+https://git.m-labs.hk/m-labs/artiq-zynq?ref=release-8"; in (fl.makeArtiqZynqPackage {target="kasli_soc"; variant="[master, standalone, satellite]"; json=<full path to the json description>;}).kasli_soc-[master, standalone, satellite]-sd' 
 # copy `results/boot.bin` to the SD card
 # insert SD card to the Kasli-SoC and boot
 artiq_coremgmt -D 192.168.1.56 config write -s ip 192.168.1.75 # or just place extra/CONFIG.TXT near the boot.bin on SD card
-# update firmware (alternative to copy to SD, if ARTIQ already running)
+# update firmware (alternative to copy to SD, if ARTIQ already running and connected)
 artiq_coremgmt config write -f boot result/boot.bin
-# reboot via power supply
+artiq_coremgmt reboot
+artiq_rtiomap dev_map.bin
+artiq_coremgmt config write -f device_map dev_map.bin
 ```
 
 ## Testing (common)
 
-```
+```shell
 artiq_sinara_tester
 ```
 
-Follow `artiq_sinara_tester` instructions for testing the hardware. For more detailed information, 
+Follow `artiq_sinara_tester` instructions for testing the hardware. For more detailed information,
 you can use this book's pages, or if there is no instruction for testing your hardware, please add them to this book.
 
 ### Known issues
 
-* ~~[artiq-zynq#197](https://git.m-labs.hk/M-Labs/artiq-zynq/issues/197) - some cards (Sampler, Mirny, Zotino and others)  
-  do not work properly with some EEM ports. You might need to connect the card to the other ports until it gets working.~~
+* ~~[artiq-zynq#197](https://git.m-labs.hk/M-Labs/artiq-zynq/issues/197) - some cards
+ (Sampler, Mirny, Zotino and others) do not work properly with some EEM ports.
+ You might need to connect the card to the other ports until it gets working.~~
   resolved (hopefully)
 
 ## Master-satellite setups
 
-1. Change `base` in JSON to the respective `master` or `satellite`, add `"enable_sata_drtio": true` if needed to the master,
-   remove `core_addr` in satellites
+1. Change `base` in JSON to the respective `master` or `satellite`, remove `core_addr` in satellites
 2. Build and flash firmware for each crate with JSONs (see instructions above)
-3. Create composed `device_db.py`: e.g. `artiq_ddb_template -o device_db.py -s 1 <satellite1>.json -s 2 <satellite2>.json <master>.json`
+3. Create combined `device_db.py`:
+   e.g. `artiq_ddb_template -o device_db.py -s 1 <satellite1>.json -s 2 <satellite2>.json <master>.json`
 4. Connect satellite crates to the master respective to their numbers via the fiber (see example picture)
-   ![](img/master_sat_connection.jpg)
+   ![Master-satellite connection](img/master_sat_connection.jpg)
 5. Ethernet is needed only for master
 6. Test hardware as it would be one crate

src/extra/CONFIG.TXT

@@ -1 +1,2 @@
 ip=192.168.1.75
+rtio_clock=int_125

src/hw/bnc_sma_idc_adapter.md

@@ -7,8 +7,8 @@ connected to the Zotino/Fastino and not the Kasli. See [Zotino/Fastino page](./z
 
 ## Setup
 
-BNC/SMA-IDC adapters should be connected to the Zotino/Fastino with 26 pin cable only. Be aware of the order of the Zotino/Fastino's ports - 
-see numbers of the channels at the board when connecting.
+BNC/SMA-IDC adapters should be connected to the Zotino/Fastino with 26 pin cable only. Be aware of the order of
+the Zotino/Fastino's ports - see numbers of the channels at the board when connecting.
 
 ## Testing
 
@@ -21,6 +21,6 @@ zotino0/fastino0 0.1 -0.1 0.2 -0.2 0.3 -0.3 0.4 -0.4 0.5 -0.5 0.6 -0.6 0.7 -0.7
 Press ENTER when done.
 ```
 
-Similar to Zotino/Fastino, check output voltages on the BNC/SMA connectors with multimeter, alongside on the Zotino/Fastino itself.
-These voltages should be very close to the respective `artiq_sinara_test`'s suggested voltages.
-See [Zotino/Fastino page](./zotino_fastino.md) for details.
+Similar to Zotino/Fastino, check output voltages on the BNC/SMA connectors with multimeter, alongside on
+the Zotino/Fastino itself.  These voltages should be very close to the respective `artiq_sinara_test`'s
+suggested voltages. See [Zotino/Fastino page](./zotino_fastino.md) for details.

src/hw/bnc_sma_ttl.md

@@ -13,8 +13,8 @@
   "hw_rev": "vX.Y", // optional
   "ports": [<port num>],
   "edge_counter": <bool>,
-  "bank_direction_low": "input",
-  "bank_direction_high": "output"
+  "bank_direction_low": "input", // or "output"
+  "bank_direction_high": "output" // or "input"
 }
 ```
 
@@ -23,7 +23,7 @@
 Switch the direction switches (shown on the picture below) according to customer requests.
 Remember, that you can only switch directions in groups of four.
 
-![](../img/dio_ttl_switches.jpg)
+![DIO TTL DIP switches](../img/dio_ttl_switches.jpg)
 
 ## Test
 
@@ -53,6 +53,7 @@ Connect ttl4 to ttl0. Press ENTER when done.
 ```
 
 1. Mount a wire with respective connector to the chosen TTL output (any should work, choose most convenient one)
-2. Connect the end of the wire to the TTL input requested by the `artiq_sinara_test` (you may use fast connector for SMA)
+2. Connect the end of the wire to the TTL input requested by the `artiq_sinara_test`
+   (you may use fast connector for SMA)
 3. Press ENTER and check that `artiq_sinara_test` prints `PASSED`
 4. Repeat 2-3 for every connector

src/hw/booster.md

@@ -8,9 +8,41 @@
 
 ### Flashing
 
+#### Easier way
+
+Download and unpack the [booster firmware](../extra/booster/booster0.5.0.tar.xz), and then:
+
+```shell
+nix-shell -p dfu-util
+dfu-util -a 0 -s 0x08000000:leave --download booster0.5.0.bin
+```
+
+#### Build from source on Fedora 38
+
+Creating proper Nix shell for updated Rust is quite troublesome, so the faster way is actually to use any
+classic Linux distribution:
+
+```shell
+git clone https://github.com/quartiq/booster.git # download sources
+sudo dnf install clang dfu-util
+cd booster/
+curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh # install Rust, we need rustup
+rustup target add thumbv7em-none-eabihf
+cargo install cargo-binutils
+rustup component add llvm-tools-preview
+cargo build --release
+cargo objcopy --release -- -O binary booster.bin
+# enter dfu mode by either serial terminal or
+# press `DFU Bootloader` button while rebooting
+dfu-util -a 0 -s 0x08000000:leave --download booster.bin
+```
+
+#### For version before September 2023 on NixOS
+
 ```shell
 git clone git@github.com:quartiq/booster.git
 cd booster
+git checkout a1f83b63180511ecd68f88a04621624941d17a41 # or earlier
 nix-shell -p rustup cargo rustc dfu-util
 rustup target add thumbv7em-none-eabihf
 cargo install cargo-binutils
@@ -26,15 +58,18 @@ dfu-util -a 0 -s 0x08000000:leave --download booster.bin
 
 1. `nix-shell -p cutecom mosquitto appimage-run`
 2. Create mosquitto config `mosquitto.conf` with your bound address:
-    ```
+
+    ```text
     bind_address 192.168.1.123
     allow_anonymous true
     ```
+
 3. `mosquitto -c mosquitto.conf -d`
 4. Run `cutecom`
-5. Connect to the Booster via `/dev/ttyACMX` port, baud 9600
+5. Connect to the Booster via `/dev/ttyACMX` port, baud 9600, switch from LF to CR on newer version
 6. Send `help` command to check if it works
 7. Enter commands (change details if necessary):
+
     ```shell
     write broker-address 192.168.1.123
     # only if you need static IP address
@@ -44,6 +79,16 @@ dfu-util -a 0 -s 0x08000000:leave --download booster.bin
     # apply changes and wait until it fully rebooted
     reset
     ```
+
+   Newer version:
+
+   ```shell
+    write broker "192.168.1.123"
+    write ip "192.168.1.75"
+    # apply changes and wait until it fully rebooted
+    reset
+    ```
+
 8. Check the Booster connects to your broker.
 9. Download AppImage from [MQTT Explorer](https://mqtt-explorer.com/)
 10. Run it with `appimage-run /path/to/MQTT-Explorer-XXX.AppImage`
@@ -52,17 +97,28 @@ dfu-util -a 0 -s 0x08000000:leave --download booster.bin
 
 ## Calibration
 
-1. Assemble Kasli with one Urukul, build and flash firmware for it with [booster.json](../extra/booster.json)
-2. Run [dds_for_booster.py](../extra/dds_for_booster.py) experiment once
-3. Attach parallel 50 Ohm load to the oscilloscope, as shown on the picture: ![](../img/50ohm_parallel_load.jpg),
+1. Assemble Kasli with one Urukul, build and flash firmware for it with [booster.json](../extra/booster/booster.json)
+2. Run [dds_for_booster.py](../extra/booster/dds_for_booster.py) experiment once
+3. Attach parallel 50 Ohm load to the oscilloscope, as shown on the picture:
+   ![50Ohm load](../img/50ohm_parallel_load.jpg),
 4. Configure oscilloscope for 1M Ohm impedance
 5. Attach attenuator to the Urukul's RF2
 6. `cd py/`
-7. You may also need to download or install python's `gmqtt` and `miniconf`
-8. Enable channels: `python -m booster --broker 192.168.1.123 --prefix dt/sinara/booster/xx-xx-xx-xx-xx-xx --channel N tune=0.1`
-9. Using [booster_template](../extra/booster_template.ods) fill in `y0`, `y1`, `m`, `c`, values using instructions below
+7. You may also need to download or install python's `gmqtt` and `miniconf`:
+
+   ```shell
+   python -m venv env
+   source env/bin/activate.fish
+   pip install git+https://github.com/quartiq/miniconf.git@84cc9046bf504cc2d0d33b84d2f3133f2faf2248#subdirectory=py/miniconf-mqtt
+   ```
+
+8. Enable channels:
+   `python -m booster --broker 192.168.1.123 --prefix dt/sinara/booster/xx-xx-xx-xx-xx-xx --channel N tune=0.1`
+9. Using [booster_template](../extra/booster/booster_template.ods) fill in `y0`, `y1`, `m`, `c`,
+   values using instructions below
 10. Update settings with the adjusted values
-11. Save settings with `python -m booster --broker 192.168.1.123 --prefix dt/sinara/booster/xx-xx-xx-xx-xx-xx --channel N save`
+11. Save settings with
+    `python -m booster --broker 192.168.1.123 --prefix dt/sinara/booster/xx-xx-xx-xx-xx-xx --channel N save`
 12. Reboot and check settings are applied
 
 ### Input power
@@ -78,7 +134,6 @@ dfu-util -a 0 -s 0x08000000:leave --download booster.bin
 _Note: default setting and Urukul's measured values are usually the same across channels, so you can
 extrapolate them for all channels._
 
-
 ### Output and reflected power
 
 1. Connect Urukul's output (see booster template for exact ports) to the Booster's input
@@ -96,4 +151,3 @@ extrapolate them for all channels._
 13. Do steps 1-10 for every channel
 
 _Note: default setting values are usually the same across channels, so you can extrapolate them for all channels._
-

src/hw/clocker.md

@@ -4,49 +4,41 @@
 
 ## JSON
 
-Put the `ext_ref_frequency` field into the JSON description if the Kasli is going to use an external frequency:
+Not present in the JSON.
 
-```json
-{
-  "hw_rev": "<hw rev>",
-  "base": "<base>",
-  ...
-  "ext_ref_frequency": <freq in Hz>,
-  ...
-  "peripherals": [...]
-}
-```
-
-On peripherals you should choose `"clk_sel": 2` on connected devices.
+Peripherals typically should choose `"clk_sel": 2` for MMCX connection and `"clk_sel": 1` for external SMA connection.
+Refer to the [official docs](https://m-labs.hk/artiq/manual/core_drivers_reference.html) by searching for `clk_sel`.
+You may also need to add `"refclk": <number>` field to the target card.
 
 ## Setup external clocker
 
 For tests, you may need an external RF generator, depending on customer needs.
 Here is example setup for SynthNV RF signal generator:
 
-1. Connect SynthNV to the workstation via USB, and 
+1. Connect SynthNV to the workstation via USB, and
 2. Install and run `cutecom`: `nix-shell -p cutecom`
 3. Set settings as on the picture below:
-![](../img/cutecom_settings.png)
+   ![cutecom settings](../img/cutecom_settings.png)
 4. Open the device, usually it is `/dev/ttyACM0`
 5. Put `?` into `Input` field and press `Enter` for current settings and help commands
 6. For changing the frequency, enter `f<freq in MHz>`, e.g. `f125.0` for 125 MHz
 7. Set RF power so that clocker would recognize the signal with `a<power>` command, e.g. `a63`
 8. Check for desired amplitude and frequency at the `RFOut` (see picture below for reference) pin via oscilloscope
-![](../img/synthnv_pins.jpg)
+   ![SynthNV pins](../img/synthnv_pins.jpg)
 9. If everything is ok, connect `RFOut` to the `CLK IN` on the Clocker (see instructions below for details)
 
 ### Setup the Clocker
 
 1. Switch `CLK SEL` pin to `EXT`/`INT` according to customer needs
-2. Connect MMCx cables according to the customer needs and boards specifications (see image below for reference): 
-   if the `INT` source is chosen, connect MMCx cable to `INT CLK`, otherwise connect external clocker to SMA `EXT CLK` 
-3. Connect the Clocker to the Kasli via 30-pin ports
-   ![](../img/clocker_ref.jpg)
+2. Connect MMCx cables according to the customer needs and boards specifications (see image below for reference):
+   if the `INT` source is chosen, connect MMCx cable to `INT CLK`, otherwise connect external clocker to SMA `EXT CLK`
+3. Connect the Clocker to the Kasli via 30-pin ports, or via external power supply
+   ![Clocker board](../img/clocker_ref.jpg)
 4. Connect the Clocker's SMA output to the Kasli's `CLK`/`CLK IN` SMA pin
-5. After assembling the crates and flashing the firmware, start Kasli and write config as follows:
-   `artiq_coremgmt config write -s rtio_clock ext0_bypass`. Please refer to the [official manual](https://m-labs.hk/artiq/manual/installing.html#miscellaneous-configuration-of-the-core-device)
-   for the details and available options
+5. After assembling the crates and flashing the firmware, start Kasli and set config if needed:
+   `artiq_coremgmt config write -s rtio_clock ext0_bypass`.
+   Please refer to the [official manual](https://m-labs.hk/artiq/manual/core_device.html#clocking)
+   for the details and available options. In most cases you may skip this step.
 6. Reboot either via `artiq_coremgmt reboot` or via power supply if the board's firmware doesn't have such command
 
 ## Testing
@@ -54,10 +46,12 @@ Here is example setup for SynthNV RF signal generator:
 Run `artiq_sinara_test` and check that it doesn't fail on the connected devices.
 
 Alternatively, if it would be shipped standalone:
+
 1. Switch to external source
 2. Connect to the external `CLK IN` clock source (frequency generator) via SMA cable
 3. Power up Clocker with power supply or EEM
-4. Check via oscilloscope all (internal and external) clocker outputs, that they output clock signal respective to the input frequency
+4. Check via oscilloscope all (internal and external) clocker outputs, that they output clock signal
+   respective to the input frequency
 5. Shut down Clocker
 6. Switch to internal source
 7. Connect clock source to the internal `CLK IN` via MMCx cable

src/hw/grabber.md

@@ -17,4 +17,4 @@ Activate the camera's frame grabber output, type 'g', press ENTER, and trigger t
 Just press ENTER to skip the test.
 ```
 
-**TODO**
+## TODO

src/hw/hardware.md

@@ -4,4 +4,5 @@ In this section you will find instructions on testing the hardware.
 If you didn't find one for your hardware, feel free to compose and add your instruction.
 
 Useful links:
-* [Sinara Wiki](https://github.com/sinara-hw/meta/wiki)
+
+* [Sinara Wiki](https://github.com/sinara-hw/meta/wiki)

src/hw/kasli.md

@@ -0,0 +1,11 @@
+# Kasli
+
+## Mounting fan onto heatsink
+
+![Kasli fan polarity](../img/kasli_fan.jpg)
+
+1. ⚠️ Verify the fan has the **correct polarity (powering on with wrong polarity will burn the MOSFET in series💥)**
+2. Place the fan on a heatsink
+3. Tap 3 threads on the heatsink using M2.5 pointy tapping screws (e.g. front panel screws)
+4. Replace the tapping screws with M2.5x14mm screws
+5. Verify the fan is secure

src/hw/kasli_soc.md

@@ -5,4 +5,14 @@
 Check the BOOT mode switches - they both should be at SD if the Kasli-SoC going to be shipped to customer.
 POR jumper needs only for JTAG mode.
 
-![](../img/kasli_soc.jpg)
+![Kasli SoC board](../img/kasli_soc.jpg)
+
+## Mounting fan onto heatsink
+
+![Kasli SoC fan](../img/kasli_soc_fan.jpg)
+
+1. ⚠️ Verify the fan has the **correct polarity (powering on with wrong polarity will burn the MOSFET in series💥)**
+2. Place the fan on a heatsink
+3. Tap 3 threads on the heatsink using M2.5 pointy tapping screws (e.g. front panel screws)
+4. Replace the tapping screws with M2.5x14mm screws
+5. Verify the fan is secure

src/hw/lvds_dio.md

@@ -0,0 +1,81 @@
+# Sinara 2245 LVDS DIO card
+
+* [Wiki](https://github.com/sinara-hw/DIO_LVDS_RJ45/wiki)
+* [Datasheet](https://m-labs.hk/docs/sinara-datasheets/2245.pdf)
+
+## JSON
+
+Be aware of the reversed EEM order on the card:
+
+```json
+[
+  {
+    "type": "dio",
+    "board": "DIO_LVDS",
+    "ports": [1],
+    "bank_direction_low": "input",
+    "bank_direction_high": "input",
+    "edge_counter": false // or true
+  }, 
+  {
+    "type": "dio",
+    "board": "DIO_LVDS",
+    "ports": [0],
+    "bank_direction_low": "output",
+    "bank_direction_high": "output"
+  }
+]
+```
+
+## Setup
+
+Switch DIPs in required position per each channel individually. Each RJ45 have 4 channels.
+
+![LVDS TTL switches](../img/lvds_ttl_switches.jpg)
+
+## Testing
+
+```bash
+*** Testing TTL inputs.
+TTL device to use as stimulus (default: ttl0): ttl0
+
+Connect ttl0 to ttl4. Press ENTER when done.
+
+PASSED  # <--------
+Connect ttl0 to ttl5. Press ENTER when done.
+
+FAILED
+Connect ttl0 to ttl6. Press ENTER when done.
+
+FAILED
+Connect ttl0 to ttl7. Press ENTER when done.
+
+FAILED
+...
+
+*** Testing TTL inputs.
+TTL device to use as stimulus (default: ttl0): ttl1
+
+Connect ttl1 to ttl4. Press ENTER when done.
+
+FAILED
+Connect ttl1 to ttl5. Press ENTER when done.
+
+PASSED  # <--------
+Connect ttl1 to ttl6. Press ENTER when done.
+
+FAILED
+Connect ttl1 to ttl7. Press ENTER when done.
+
+FAILED
+...
+```
+
+1. Connect a RJ45 output port to a input port
+2. Run `artiq_sinara_tester`  
+3. One TTL will pass while other will fail
+4. Run `artiq_sinara_tester` again and increment the stimulus (e.g. `ttl0->ttl1->ttl2->ttl3`)
+   until all channels on the input port passed at least once
+5. Plug into to another input port and repeat 2-4 until all input ports are tested
+
+It is incompatible with other TTL cards, so you will need to use same or other LVDS card for proper testing.

src/hw/mcx_ttl.md

@@ -3,7 +3,7 @@
 * [Wiki](https://github.com/sinara-hw/DIO_MCX/wiki)
 * [Datasheet](https://m-labs.hk/docs/sinara-datasheets/2238.pdf)
 
-# JSON
+## JSON
 
 ```json
 [
@@ -33,9 +33,9 @@ and 2 entries in the JSON.
 Switch the direction switches (shown on the picture below) according to customer requests.
 Remember, that you can only switch directions in groups of four.
 
-![](../img/ttl_mcx.jpg)
+![MCX TTL switches](../img/ttl_mcx.jpg)
 
 ## Test
 
-Refer to the [BNC/SMA TTL instructions](bnc_sma_ttl.md) for testing, but chose appropriate connector, 
-and respect increased number of channels.
+Refer to the [BNC/SMA TTL instructions](bnc_sma_ttl.md) for testing, but chose appropriate connector,
+and respect increased number of channels.

src/hw/mirny_almazny.md

@@ -8,11 +8,74 @@
 ```json
 {
   "type": "mirny",
-  "almazny": true, // for mirny with almazny only 
-  "ports": [<port num>]
+  "almazny": true, // for mirny with almazny only
+  "almazny_hw_rev": "v1.2", // optional, must be provided for legacy (<=v1.1) Almazny
+  "ports": [<port num>],
+  "clk_sel": "mmcx", // optional
+  "refclk": 125e6 // optional
 }
 ```
 
+## Getting the firmware
+
+On Hydra you can find [Mirny 0.3.1 firmware](https://nixbld.m-labs.hk/job/artiq/gluelogic/mirny-cpld-release).
+It contains a single `.jed` file that can be flashed following [flashing instructions](#flashing).
+This firmware supports Almazny v1.2+.
+
+If you are using a legacy Almazny (v1.0-1.1), due to different signals routed, you need to flash the older
+[0.2.4 firmware with Almazny support](https://nixbld.m-labs.hk/job/artiq/gluelogic/mirny-cpld-legacy-almazny).
+
+### Building firmware (optional)
+
+However, if you need to make chances or build from source, follow these instructions.
+
+Once you get your hands on the firmware source code, you will need to work around few shortcomings of Nix, mainly
+not being able to run dynamically linked executables.
+
+You will need:
+
+* Xilinx ISE 14.7 installed on your system (this guide is assuming `/opt/Xilinx` path),
+* an environment with Migen.
+
+One way to do it is to create an FHS environment, like ARTIQ does for Vivado, within ARTIQ's `flake.nix`
+(to leverage Migen already being there), by adding these lines:
+
+```nix
+iseEnv = pkgs.buildFHSEnv {
+  name = "ise-env";
+  targetPkgs = vivadoDeps;
+};
+
+ise = pkgs.buildFHSEnv {
+  name = "ise";
+  targetPkgs = vivadoDeps;
+  profile = "set -e; source /opt/Xilinx/14.7/ISE_DS/settings64.sh";
+  runScript = "ise";
+};
+```
+
+Add them below `vivadoEnv`. Then add `iseEnv` and `ise` to the dev shell's build inputs. Call `nix develop` on that.
+
+Then you can build Mirny:
+
+```shell
+nix develop
+ise-env
+cd ../mirny  # or wherever your source is at
+source /opt/Xilinx/14.7/ISE_DS/settings64.sh
+python mirny_impl.py
+```
+
+### Flashing
+
+For flashing, you will need Xilinx ISE 14.7 installed on your system (here assuming `/opt/Xilinx` path), and `xc3sprog`
+with the appropriate HS2 JTAG adapter.
+
+```shell
+nix-shell -p xc3sprog
+xc3sprog -c jtaghs2 -m /opt/Xilinx/14.7/ISE_DS/ISE/xbr/data -v build/mirny.jed
+```
+
 ## Testing
 
 ### Without Almazny
@@ -24,30 +87,30 @@ mirny0_cpld...
 ...done
 All mirny channels active.
 Frequencies:
-mirny0_ch0	1000MHz
+mirny0_ch0 1000MHz
 mirny0_ch0 info: {'f_outA': 1000000000.0, 'f_outB': 8000000000, 'output_divider': 4, 'f_vco': 4000000000, 'pll_n': 40, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch1	1100MHz
+mirny0_ch1 1100MHz
 mirny0_ch1 info: {'f_outA': 1100000000.0, 'f_outB': 8800000000, 'output_divider': 4, 'f_vco': 4400000000, 'pll_n': 44, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch2	1200MHz
+mirny0_ch2 1200MHz
 mirny0_ch2 info: {'f_outA': 1200000000.0, 'f_outB': 9600000000, 'output_divider': 4, 'f_vco': 4800000000, 'pll_n': 48, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch3	1300MHz
+mirny0_ch3 1300MHz
 mirny0_ch3 info: {'f_outA': 1300000000.0, 'f_outB': 10400000000, 'output_divider': 4, 'f_vco': 5200000000, 'pll_n': 52, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
 ```
 
 After running `artiq_sinara_test`:
 
 1. Install gqrx `nix-shell -p gqrx`
-2. Connect bladeRF via USB cable only
-3. Run gqrx and choose `BladeRF #<number>...`
+2. Connect HackRF One via USB cable only
+3. Run gqrx and choose `HackRF HackRF One...`
 4. Default settings
 5. When gqrx loaded, start DSP processing with frequency at mirnyN_chM freq
 6. Connect the probe through attenuator to the Mirny's port
 7. You should see significant signal emission on choosen freq compared to nearby freqs (see image below)
 8. Repeat 5-7 for every channel
 
-![](../img/mirny_gqrx.png)
+![Mirny GQRX example](../img/mirny_gqrx.png)
 
-### With Almazny
+### With Almazny (ARTIQ 7)
 
 At first, `artiq_sinara_test` will prompt you for testing Mirnies as the would be without Almazny.
 After that, it will prompt you with testing the Almazny:
@@ -60,21 +123,21 @@ mirny0_cpld...
 mirny1_cpld...
 ...done
 Testing attenuators. Frequencies:
-mirny0_ch0	4000MHz
+mirny0_ch0 4000MHz
 mirny0_ch0 info: {'f_outA': 2000000000.0, 'f_outB': 8000000000, 'output_divider': 2, 'f_vco': 4000000000, 'pll_n': 40, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch1	4100MHz
+mirny0_ch1 4100MHz
 mirny0_ch1 info: {'f_outA': 2050000000.0, 'f_outB': 8200000000, 'output_divider': 2, 'f_vco': 4100000000, 'pll_n': 41, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch2	4200MHz
+mirny0_ch2 4200MHz
 mirny0_ch2 info: {'f_outA': 2100000000.0, 'f_outB': 8400000000, 'output_divider': 2, 'f_vco': 4200000000, 'pll_n': 42, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny0_ch3	4300MHz
+mirny0_ch3 4300MHz
 mirny0_ch3 info: {'f_outA': 2150000000.0, 'f_outB': 8600000000, 'output_divider': 2, 'f_vco': 4300000000, 'pll_n': 43, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny1_ch0	4500MHz
+mirny1_ch0 4500MHz
 mirny1_ch0 info: {'f_outA': 2250000000.0, 'f_outB': 9000000000, 'output_divider': 2, 'f_vco': 4500000000, 'pll_n': 45, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny1_ch1	4600MHz
+mirny1_ch1 4600MHz
 mirny1_ch1 info: {'f_outA': 2300000000.0, 'f_outB': 9200000000, 'output_divider': 2, 'f_vco': 4600000000, 'pll_n': 46, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny1_ch2	4700MHz
+mirny1_ch2 4700MHz
 mirny1_ch2 info: {'f_outA': 2350000000.0, 'f_outB': 9400000000, 'output_divider': 2, 'f_vco': 4700000000, 'pll_n': 47, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
-mirny1_ch3	4800MHz
+mirny1_ch3 4800MHz
 mirny1_ch3 info: {'f_outA': 2400000000.0, 'f_outB': 9600000000, 'output_divider': 2, 'f_vco': 4800000000, 'pll_n': 48, 'pll_frac1': 0, 'pll_frac2': 0, 'pll_mod2': 1, 'prescaler': '4/5', 'sysclk': 100000000.0, 'ref_doubler': False, 'ref_divider': False, 'ref_counter': 1, 'f_pfd': 100000000}
 RF ON, all attenuators ON. Press ENTER when done.
 
@@ -92,7 +155,11 @@ RF OFF. Press ENTER when done.
 Similar to _Without Almazny_, check mirnies' channels emissions on defined frequencies.
 You should also see differences in various modes, but that may require disabling the gain.
 
-
 ### Tips
 
-Mirnies often fail `ValueError: MUXOUT not high`, in that case restart the tests or reboot the board(s).
+~~Mirnies often fail `ValueError: MUXOUT not high`, in that case restart the tests or reboot the board(s).~~ - fixed
+in [9569cfb](https://github.com/m-labs/artiq/commit/9569cfb26329c0acdc1705d3256d2506b7bccce5)
+
+For Almazny v1.0 and 1.1 support, CPLD firmware 0.2.4 (linked above) must be flashed onto Mirny.
+
+For Almazny v1.2+ support, CPLD firmware 0.3.1+ (with fixes) must be flashed onto Mirny.

src/hw/phaser.md

@@ -25,25 +25,20 @@ phaser0 10+0 10+1 10+2 10+3 10+4 MHz
 ### Upconverter
 
 1. Install gqrx `nix-shell -p gqrx`
-2. Connect bladeRF via USB cable only
-3. Run gqrx and choose `Nuand bladeRF SN <number>...`
-4. Input rate 20000000, other settings are default
+2. Connect HackRF One via USB cable only
+3. Run gqrx and choose `HackRF HackRF One...`
+4. Default settings
 5. Lower the gain in `Input options`
 6. When gqrx loaded, start DSP processing with frequency near 2.875 GHz +- DUC frequencies from `artiq_sinara_test`
    in `Receiver Options`
 7. Connect the probe through attenuator to the Phaser's RF ports
 8. You should see 5 tones on `artiq_sinara_test`'s frequencies, like on the pictures below for RF0 and RF1 respectively:
-   ![](../img/phaser_upconverter_gqrx_rf0.png)
-   ![](../img/phaser_upconverter_gqrx_rf1.png)
-
+   ![Phaser GQRX example for RF0](../img/phaser_upconverter_gqrx_rf0.png)
+   ![Phaser GQRX example for RF1](../img/phaser_upconverter_gqrx_rf1.png)
 
 ### Baseband
 
-1. Install gqrx `nix-shell -p gqrx`
-2. Connect bladeRF via USB cable only
-3. Run gqrx and choose `Nuand bladeRF SN <number>...`
-4. Input rate 15000000, other settings are default
-5. When gqrx loaded, start DSP processing with frequency near 2.875 GHz (???)
-6. Connect the probe through attenuator to the Phaser's ports RF0 or RF1 (not the ADC)
-7. You should see 5 tones on `artiq_sinara_test`'s frequencies (???):
-   ![phaser_baseband.png](../img/phaser_baseband.png)
+1. Connect the probe through attenuator to the Phaser's ports RF0 or RF1 (not the ADC)
+2. Find FTT (Fourier Transform) function in the oscilloscope
+3. Start processing with frequency near DUC frequencies from `artiq_sinara_test`
+4. You should see 5 tones on `artiq_sinara_test`'s frequencies

src/hw/sampler.md

@@ -32,4 +32,5 @@ PASSED
 
 1. Apply 1.5V (connect the AA-battery) to the `samplerX`'s requested channel
 2. Press `Enter`, the `artiq_sinara_test` should output `PASSED`
-3. Repeat steps 1-2 for every available channel.
+3. Repeat steps 1-2 for every available channel.
+4. Disassemble AA-battery tool as it risks getting corrosion

src/hw/shuttler.md

@@ -0,0 +1,138 @@
+# Sinara 5716 DAC Shuttler
+
+The Sinara 5716 DAC Shuttler consists of the [Shuttler](https://github.com/sinara-hw/Shuttler),
+[Remote AFE-Board](https://github.com/sinara-hw/Shuttler), and
+[EEM FMC Carrier](https://github.com/sinara-hw/EEM_FMC_Carrier) (EFC) Board.
+
+The EFC Board has an FPGA running Kasli Satellite. DRTIO communication is established through the EEM Cable.
+At first power up, EFC Board and connected Kasli/Kasli-soc calibrate the clock skews on their own EEM transceiver
+and then store the value into the flash memory/SD Card.
+
+## JSON
+
+```json
+{
+    "type": "shuttler",
+    "ports": [<port num>]
+}
+```
+
+## Hardware Configurations and Connections
+
+### EEM Cable Connection
+
+Only the EEM0 port on the EFC board is used. The EEM Cable provides power. You can ignore the barrel jack at
+the back of the board if it is placed.
+
+### CLK Input
+
+The EFC requires a **common** clock source with the connected device.
+
+For the EFC Board v1.0, please refer to this [issue](https://github.com/sinara-hw/EEM_FMC_Carrier/issues/44).
+
+For the EFC Board v1.1 (or later), there is a DIP switch to select the clock source.
+![efc_clk_sel](../img/efc_clk_sel.png)
+
+| Clock Source | CLK_SEL0 | CLK_SEL1 |
+|---|---|---|
+| Front Panel SMA | 0 | 0 |
+| Internal Oscillator(default) | 1 | 0 |
+| MMCX | 0 | 1 |
+| PE CLK | 1 | 1 |
+
+### VADJ Power
+
+The EFC Board has configurable Digital IO Voltage Level/PSU called VADJ. You should configure VADJ to 1.8V by
+fitting W1/W2 jumper accordingly.
+![efc_vadj_settings](../img/efc_vadj_settings.jpg)
+
+### Remote AFE Board Connections
+
+The Remote AFE Board is not installed in the crate and should be shipped separately. When you test the EFC Board,
+please connect the Mini SAS Cables in this orientation.
+![Mini-Sas Connections](../img/shuttler_afe_connections.jpg)
+
+There is no PSU for the Remote AFE Board at this moment. For testing purposes, you should connect the Remote AFE
+Board to a lab PSU supplying +15V, -15V, and +5V. Please make sure all voltages share a common GND and check the
+pinouts carefully. Incorrect power connections can damage the Remote AFE Board.
+
+## Building EFC Board Gateware and Firmware
+
+The EFC Board gateware and firmware are on the [Artiq](https://github.com/m-labs/artiq) repo.
+
+To build the gateware and firmware,
+
+```shell
+python -m artiq.gateware.targets.efc --hw-rev [v1.0, v1.1]
+```
+
+## Routing Table Configuration if Shuttler is Connected to Kasli Satellite
+
+When Kasli Satellite is compiled with Shuttler, Shuttler is connected to the Satellite Repeater instance. Therefore,
+you will need to specify the routing table on the Kasli/Kasli-soc master in order to access the Shuttler hardware.
+Shuttler locates at DEST 4 connecting to Repeater ID #3. The ID number goes up accordingly if more than one
+Shuttler is connected.
+
+Here provides an example to configure the routing table.
+You have 1 Kasli Master and 1 Kasli Satellite. Kasli Master (SFP1)(DEST1) port is connected to
+Kasli Satellite(SFP0)(DEST0). Shuttler is connected to Kasli Satellite with DRTIO over EEM Cable(DEST4).
+
+1. Initialize the Routing Table: `artiq_route rt.bin init`
+2. Add the routing table entry for Kasli Master's Peripherals: `artiq_route rt.bin set 0 0`
+3. Add the routing table entry for Kasli Satellite's Peripherals: `artiq_route rt.bin set 1 1 0`
+4. Add the routing table entry for Shuttler: `artiq_route rt.bin set 4 1 4 0`
+5. Flash the routing table on Kasli Master: `artiq_coremgmt config write -f routing_table rt.bin`
+
+## Flashing
+
+When you are building a crate with shuttler(s), you should erase the flash/sd card config on both the EFC and
+Kasli/Kasli-SoC. Always flash the EFC Board first before flashing the Kasli/Kasli-soc.
+
+If either of the following elements is changed, you will need to **ERASE** the stored calibrated values on both
+the EFC and Kasli Master, or the communication between the boards cannot be established:
+
+1. EEM Cable
+2. Clock-Related Cable
+3. EFC Board Gateware
+4. Kasli/Kasli-Soc Master Gateware
+5. EFC Board/Kasli/Kasli-Soc PCB
+
+To erase the flash on the EFC board,
+
+```shell
+artiq_flash -t efc erase
+```
+
+To flash the gateware and firmware onto the EFC board,
+
+```shell
+artiq_flash --srcbuild -t [efc1v0, efc1v1] -d artiq_efc/shuttler
+```
+
+## Testing
+
+1. Connect the Remote AFE Card to the Shuttler
+2. Power up the Remote AFE Board and the Kasli/Kasli-Soc with the connected Shuttler.
+3. Check all Remote AFE Board Power Indicator LEDs.
+4. Run the `artiq_sinara_test`.
+
+```text
+*** Testing LEDs.
+Check for blinking. Press ENTER when done.
+...
+Testing LED: shuttler0_led0
+Testing LED: shuttler0_led1
+
+*** Testing Shuttler.
+Testing:  shuttler0
+Check Remote AFE Board Relay LED Indicators.
+Press Enter to Continue.
+
+Testing Shuttler DAC
+Voltages: 0.1 -0.1 0.2 -0.2 0.3 -0.3 0.4 -0.4 0.5 -0.5 0.6 -0.6 0.7 -0.7 0.8 -0.8
+Press Enter to Continue.
+
+PASSED
+
+...
+```

src/hw/stabilizer.md

@@ -4,19 +4,129 @@
 * [QUARTIQ Manual](https://quartiq.de/stabilizer/)
 * [Firmware](https://github.com/quartiq/stabilizer)
 
+EEM is used for power only, and it can be alternatively powered by 12V barrel jack or PoE.
+
 ## JSON
 
-No JSON modifications required.
+Not present in the JSON.
+
+## Getting the firmware
+
+You can get the firmware from [Hydra](https://nixbld.m-labs.hk/jobset/mcu/mcu-contrib).
+
+* `stabilizer-dual-iir` supports Pounder v1.2 - probably you should flash this one,
+* `stabilizer-dual-iir-pounder_v1_0` supports Pounder 1.0 and 1.1 (legacy),
+* `stabilizer-lockin` is a different application which we do not usually flash.
+
+These all include changes to the mainline code to include Pounder telemetry.
+
+### Building (optional)
+
+Please keep in mind that the firmware from the official Quartiq repository does not include support for Pounder in MQTT,
+you may need to use a fork for that. But if the stabilizer is without a Pounder, it's also a valid option.
+
+There is no Nix Flake support to make things easier, so you need to set up rust and cargo manually.
+Start with cloning the stabilizer repository and opening a new shell with dfu-util (for flashing) and rustup
+(for building).
+
+```shell
+nix-shell -p dfu-util rustup
+```
+
+Set up the toolchain, this should be done only once:
+
+```shell
+rustup target add thumbv7em-none-eabihf
+cargo install cargo-binutils
+rustup component add llvm-tools-preview
+rustup update
+rustup default stable
+```
+
+Building:
+
+```shell
+cargo build --release
+cargo objcopy --release --bin dual-iir -- -O binary dual-iir.bin
+```
+
+## Flashing
+
+Once you have the binary, you can now flash it.
+
+1. Without firmware on the device or with older firmware (without USB serial console),
+   you need to use the jumper method:
+   1. Have the Stabilizer disconnected from power.
+   2. Use a jumper of some sort to short BOOT pins on the board.
+   3. Turn on the power.
+   4. You can remove the jumper after few seconds.
+2. With newer firmware with USB serial console:
+   1. Connect the Stabilizer to power.
+   2. Connect USB cable to the Stabilizer.
+   3. Ensure you have `pyserial` module either with `nix-shell -p python312Packages.pyserial` for NixOS users
+      or using `pip install pyserial` if you are using venv.
+   4. Run `python -m serial /dev/ttyACM0` to connect the serial port using `pyserial`.
+   5. Input `platform dfu` in the console.
+3. Once the device is now in DFU mode, flash the device with the following command (needs `nix-shell -p dfu-util`):
+
+   ```shell
+   dfu-util -a 0 -s 0x08000000:leave -R -D stabilizer-dual-iir.bin
+   ```
+
+4. Look for "File downloaded successfully".
+
+For normal usage, the stabilizer must be configured with USB console later (try `help` command first),
+to set its IP address and MQTT broker address. However, for general testing (like the one below), you don't need to
+configure it any further.
+
+### Clearing settings
+
+In case someone sets some setting wrongly, or updates the firmware and suddenly there's an incompatibility,
+you may find (firmware, not yourself) in a state of panic, where it will not allow you to change the settings back.
+
+1. Get into DFU mode (described above), probably with jumper method.
+2. Use dfu-util to clear the flash completely:
+
+   ```shell
+   dfu-util -a 0 -s 0x08000000:mass-erase:force:leave
+   ```
+
+3. Reflash the target firmware.
 
 ## Testing
 
-1. Ensure that the [firmware](https://github.com/quartiq/stabilizer) has been flashed onto the Stabilizer
+1. Ensure that the [firmware](#getting-the-firmware) has been flashed onto the Stabilizer
 2. Turn on the crate/Stabilizer via EEM cable or power supply
 3. Set up the signal generator for an amplitude of 1V, frequency of 10kHz, and a sine wave
 4. Use the splitter to connect the generator's output to ADC0 and to the oscilloscope (refer to the picture below)
-   ![](../img/stabilizer_signal_generator.jpg)
+   ![Signal generator settings for Stabilizer](../img/stabilizer_signal_generator.jpg)
 5. Configure the oscilloscope so that the sine wave is clearly visible
 6. Connect the second channel of the oscilloscope to the Stabilizer's DAC0
 7. Ensure that there is the same wave on the second channel, with a small delay, as on the first channel
 8. Repeat steps 4-7 for ADC/DAC1 (refer to the picture below for connection reference)
-   ![](../img/stabilizer_ports_match.jpg)
+   ![Stabilizer matching ports](../img/stabilizer_ports_match.jpg)
+
+## Setting up MQTT
+
+For testing the Stabilizer, it's usually enough to do the settings above, as signal is filtered by the firmware.
+However, if you need to test the network connectivity or Pounder telemetry, MQTT may come useful.
+
+On PC side:
+
+1. Get IP address of your machine, e.g. with ``ip a``. Make note of it, that's the broker address.
+2. Get mosquitto, e.g. with ``nix-shell -p mosquitto``.
+3. Run mosquitto with the config from Stabilizer repository: ``mosquitto -c mosquitto.conf``
+4. If you don't have it yet, download [MQTT Explorer](https://github.com/thomasnordquist/MQTT-Explorer/releases).
+5. Call ``nix-shell -p appimage-run``, then ``appimage-run MQTT-Explorer-0.4.0-beta6.AppImage``.
+6. Connect to the MQTT broker under your own IP address.
+
+Configure Stabilizer:
+
+1. Connect the Stabilizer to power.
+2. Connect USB cable to the Stabilizer.
+3. Run ``cutecom`` or your favorite terminal emulator, connect to ``/dev/ttyACM0``.
+4. Change the broker setting with: ``set /net/broker "<ip of your machine>"``.
+5. Reboot with ``platform reboot``.
+
+Now, disconnect the USB and connect the Ethernet cable to the Stabilizer, as both won't fit at the same time.
+Stabilizer should connect to moquitto automatically, and you should see the MQTT settings pop up in the MQTT Explorer.

src/hw/suservo.md

@@ -17,17 +17,18 @@ With enabled SUServo mode, you only need to add `suservo` to JSON file, with its
 ## Setup
 
 To enable, on bottoms of each Urukul, switch first switches 1 and 2 to `ON`, as on the picture:
-![](../img/urukul_pins_suservo.jpeg)
+![Urukul DIP switches for SUServo mode](../img/urukul_pins_suservo.jpeg)
 
 ### Easier access to the switches (for big racks)
 
 When the crate is assembled, it may be difficult to pull out the cards to access the switches.
 Hence for big racks it may be easier to remove the upper perforated panel. For this:
+
 1. Unscrew from both sides:
    ![rack_urukul_switch_access.jpg](../img/rack_urukul_switch_access.jpg)
 2. Remove empty front panels
 3. Gently push out the perforated panel, applying the force from rack's back and front
-4. With tweezers and following the [basic operating hints](../build_test_firmware.md#operating-hints-and-warnings) 
+4. With tweezers and following the [basic operating hints](../build_test_firmware.md#operating-hints-and-warnings)
    switch the switches in desired direction
 5. Install the perforated and front panels back, screw the screws
 
@@ -61,10 +62,12 @@ Verify frequency and power behavior.
 ```
 
 1. Connect oscilloscope to the `urukul0` port and configure with time and voltage scale and trigger threshold
-   so that you'll see sine wave, like on the picture: ![](../img/urukul_suservo_output_without_battery.jpg)
+   so that you'll see sine wave, like on the picture:
+   ![SUServo output without battery](../img/urukul_suservo_output_without_battery.jpg)
 2. Verify amplitude and frequency
 3. Apply 1.5V (connect the AA-battery) to the `sampler0` port, as on the
-   picture: ![](../img/urukul_sampler_susevo_connections.jpg)
-4. You should see significant amplitude decrease, as in the picture: ![](../img/urukul_suservo_output_with_battery.jpg)
+   picture: ![Urukul-Sampler matching connections for SUServo](../img/urukul_sampler_susevo_connections.jpg)
+4. You should see significant amplitude decrease, as in the picture:
+   ![SUServo output with battery](../img/urukul_suservo_output_with_battery.jpg)
 5. Verify amplitude difference, and the frequency to be unchanged
 6. Repeat steps 1-5 for every available channel.

src/hw/thermostat.md

@@ -23,9 +23,36 @@ dfu-util -a 0 -s 0x08000000:leave -D thermostat.bin
 Then check that fans are working properly.
 You may also check fan controls via `fan` commands (see the firmware documentation).
 
+## Test PID
+
+1. For Zotino: connect 10-pins IDC 2.54mm FC cable from internal Thermostat connector to the Zotino TEC
+2. General TEC: connect external connector to the TEC
+3. Connect Ethernet and PSU
+4. Run:
+
+   ```shell
+   git clone gitea@git.m-labs.hk:esavkin/thermostat.git
+   cd thermostat
+   git checkout zotino-tec
+   nix develop
+   python pytec/tec_qt.py
+   ```
+
+5. In `Output Config`, set limits:
+   * `Max Cooling Current` - 400 mA
+   * `Max Heating Current` - 400 mA
+   * `Max Voltage Difference` - 1 V
+6. `PID Config` -> `PID Auto Tune` set desired target temperature,
+   which should be slightly above your room temperature (+10C)
+7. Set `Thermistor Config` -> `B` and other values, according to the datasheet of the TEC module,
+   for example for Zotino `B` is `3455 K`
+8. Run `PID Config` -> `PID Auto Tune` -> `Run` and check graphs that the measured temperature
+   goes to the target temperature, and eventually stabilizes at +- 0.01 of the target
+
 ## Common problems
 
 ### Thermostat doesn't connect or doesn't enter DFU mode
 
-Carefully take out Thermostat from its protective box, unscrewed all screws before. Apply jumper and power on the Thermostat.
-Now it should be in DFU mode.
+Carefully take out Thermostat from its protective box, unscrewed all screws before.
+Apply jumper and power on the Thermostat.
+Now it should be in DFU mode.

src/hw/urukul.md

@@ -20,15 +20,36 @@
 
 ## Setup
 
-Check if [SUServo](./suservo.md) is enabled/disabled respective to customer needs. Connect to the clocker source.
+Check if [SUServo](./suservo.md) is enabled/disabled respective to customer needs.
+Connect to the clock source - either Clocker, Kasli or external via SMA.
 
 ### Synchronization
 
-Phase synchronization enables phase control from Kasli/Kasli-SoC with an absolute phase reference, i.e. you can use the phase control API in the coredevice driver.
-Without synchronization the phase between Urukuls will not drift, but it can change across reboots, and the phase control API cannot be used.
-Synchronization requires Kasli and Urukul to be clocked from the same oscillator with <<1ns noise, otherwise the synchronization may fail, and that's
-why this feature is disabled by default.
-There is no intrinsic impact on Urukul output phase noise and the synchronization process is quick and reliable when done correctly.
+Phase synchronization enables phase control from Kasli/Kasli-SoC with an absolute phase reference,
+i.e. you can use the phase control API in the coredevice driver. Without synchronization the phase between Urukuls
+will not drift, but it can change across reboots, and the phase control API cannot be used. Synchronization requires
+Kasli and Urukul to be clocked from the same oscillator with <<1ns noise, otherwise the synchronization may fail,
+and that's why this feature is disabled by default. There is no intrinsic impact on Urukul output phase noise and
+the synchronization process is quick and reliable when done correctly.
+
+### One-EEM mode
+
+Users may choose to use only one EEM port, if they want more cards to be in their crate. However following features
+will become unavailable:
+
+* SU-Servo
+* Low-latency RF switch control
+* Synchronization
+
+RF switches are still available but the commands need to go over the SPI bus so it's higher-latency
+and lower-resolution.
+
+### Urukul 4412
+
+Urukul 4412 has higher frequency resolution (47 bit against 32 at Urukul 4410), however lacks such features:
+
+* SU-Servo
+* Synchronization
 
 ## Testing
 
@@ -40,18 +61,18 @@ urukul0_cpld: initializing CPLD...
 urukul0_cpld: testing attenuator digital control...
 urukul0_cpld: done
 Calibrating inter-device synchronization...
-urukul0_ch0	no EEPROM synchronization
-urukul0_ch1	no EEPROM synchronization
-urukul0_ch2	no EEPROM synchronization
-urukul0_ch3	no EEPROM synchronization
+urukul0_ch0 no EEPROM synchronization
+urukul0_ch1 no EEPROM synchronization
+urukul0_ch2 no EEPROM synchronization
+urukul0_ch3 no EEPROM synchronization
 ...done
 All urukul channels active.
 Check each channel amplitude (~1.6Vpp/8dbm at 50ohm) and frequency.
 Frequencies:
-urukul0_ch0	10MHz
-urukul0_ch1	11MHz
-urukul0_ch2	12MHz
-urukul0_ch3	13MHz
+urukul0_ch0 10MHz
+urukul0_ch1 11MHz
+urukul0_ch2 12MHz
+urukul0_ch3 13MHz
 Press ENTER when done.
 
 Testing RF switch control. Check LEDs at urukul RF ports.
@@ -63,7 +84,6 @@ Press ENTER when done.
 3. Measure frequencies and amplitudes on each connector, check with `artiq_sinara_test`'s respective values
 4. When done, proceed with `artiq_sinara_test` and check LEDs are lighting up one after another
 
-
 ## Common problems
 
 ### Urukul AD9912 product id mismatch or missing LEDs
@@ -72,22 +92,27 @@ Press ENTER when done.
 ValueError: Urukul AD9912 product id mismatch
 ```
 
-Some Urukuls may fail with this error during testing, usually meaning that the Urukul has not been flashed with the 
-firmware, especially if the ID is `65535` (you will need to edit the code to check this). 
+Some Urukuls may fail with this error during testing, usually meaning that the Urukul has not been flashed with the
+firmware, especially if the ID is `65535` (you will need to edit the code to check this).
 
-Another common symptom of no firmware is that no LEDs are lit up, besides Power Good - whereas if the firmware has been flashed, the RF channels will be lit red.
+Another common symptom of no firmware is that no LEDs are lit up, besides Power Good - whereas if the firmware has been
+flashed, the RF channels will be lit red.
 
 You can flash the firmware yourself with a JTAG adapter:
 
-1. Download the latest binary release from [quartiq/urukul](https://github.com/quartiq/urukul) and extract the `urukul.jed` file.
-2. Connect the Urukul with the JTAG adapter to the PC and connect its EEM0 to any available Kasli/Kasli-SoC (**do not hot-plug**), then power on the Kasli/Kasli-SoC.
+1. Download the latest binary release from [quartiq/urukul](https://github.com/quartiq/urukul) and extract the
+   `urukul.jed` file.
+2. Connect the Urukul with the JTAG adapter to the PC and connect its EEM0 to any available Kasli/Kasli-SoC
+   (**do not hot-plug**), then power on the Kasli/Kasli-SoC.
 3. Run `nix-shell -p xc3sprog`.
 4. Run `xc3sprog -c jtaghs2 urukul.jed -m /opt/Xilinx/Vivado/<available version>/data/xicom/cable_data/digilent/lnx64/xbr/`.
-5. If the last command outputs Verify: Success, then your Urukul is ready. It can also output the message 
+5. If the last command outputs Verify: Success, then your Urukul is ready. It can also output the message
+
    ```shell
    *** buffer overflow detected ***: terminated
    Aborted (core dumped)
    ```
+
    , which is okay if `Verify: Success` was also emitted.
 
 ### no valid window/delay
@@ -96,7 +121,7 @@ You can flash the firmware yourself with a JTAG adapter:
 ValueError: no valid window/delay
 ```
 
-Check with the customer to see if synchronization is necessary, and disable it if it is not. 
+Check with the customer to see if synchronization is necessary, and disable it if it is not.
 In any case, simply restart the test.
 
 ### Noise instead of signal
@@ -105,8 +130,8 @@ It may be due to misconfiguration of SUServo. Check that both firmware and pins
 
 ### Improper frequency
 
-This can happen due to lack/bad clock source connection. Check that clock source is connected respective to the customer needs,
-and if it is connected to the [Clocker](clocker.md), check that clocker receives clock signal properly.
+This can happen due to lack/bad clock source connection. Check that clock source is connected respective to the
+customer needs, and if it is connected to the [Clocker](clocker.md), check that clocker receives clock signal properly.
 
 ### Urukul proto_rev mismatch
 
@@ -122,9 +147,9 @@ Check the ports are connected respectively to the JSON description.
 ValueError: PLL lock timeout
 ```
 
-This can happen due to lack/bad clock source connection. Check that clock source is connected respective to the customer needs,
-and if it is connected to the [Clocker](clocker.md), check that clocker receives clock signal properly and `EXT`/`INT` pin 
-matches real clocker source.
+This can happen due to lack/bad clock source connection. Check that clock source is connected respective
+to the customer needs, and if it is connected to the [Clocker](clocker.md), check that clocker receives clock signal
+properly and `EXT`/`INT` pin matches real clocker source.
 
 ### Urukul AD9910 AUX_DAC mismatch
 
@@ -132,4 +157,25 @@ matches real clocker source.
 ValueError: Urukul AD9910 AUX_DAC mismatch
 ```
 
-Ensure it is the AD9910 and not the AD9912. Also check SUServo pins are set up respective to the JSON description.
+Ensure it is the AD9910 and not the AD9912. Also check SUServo pins are set up respective to the JSON description.
+
+### Jagged signal with 1GHz external clock on AD9910
+
+By default, on AD9910 external clock signal is divided by 4, while it should be not divided at all with PLL disabled.
+Change the `clk_div` parameter to the CPLD in the device_db file:
+
+```python
+device_db["urukulX_cpld"] = {
+    "type": "local",
+    "module": "artiq.coredevice.urukul",
+    "class": "CPLD",
+    "arguments": {
+        "spi_device": "spi_urukul0",
+        "sync_device": None,
+        "io_update_device": "ttl_urukul0_io_update",
+        "refclk": 1000000000.0,
+        "clk_sel": 1,
+        "clk_div" : 1 # <--- add this line
+    }
+}
+```

src/hw/zotino_fastino.md

@@ -12,21 +12,22 @@
   "ports": [<port num>]
 }
 ```
+
 ```json
 {
   "type": "fastino",
   "hw_rev": "v1.2", // optional
+  "log2_width": <0 to 5, default 0>, // pack multiple (in powers of 2) DAC channels into one RTIO write
   "ports": [<port num>]
 }
 ```
 
-Fastino uses two physical EEM channels, but in the JSON file there should be only one channel specified, 
-and it should be the one connected to Fastino's EEM0.
+Fastino uses one physical EEM channel, despite having two EEM ports.
 
 ## Setup
 
-Connect the BNC/SMA-IDC adapters to the Zotino/Fastino with 26-pin cable if needed by customer. Be aware of the ports order - 
-see reference numbers on the board.
+Connect the BNC/SMA-IDC adapters to the Zotino/Fastino with 26-pin cable if needed by customer.
+Be aware of the ports order - see reference numbers on the board.
 
 ## Testing
 
@@ -49,10 +50,35 @@ Press ENTER when done.
 3. If there are [BNC/SMA-IDC adapters](./bnc_sma_idc_adapter.md), also check their voltages - they should be the same
 4. Check LEDs are on
 
-
 ## Common problems
 
 ### High-freq audible noise and output values all near -0.1 on Zotino v1.4.2
 
 This may happen when power-cycle is too short. Power down the crate, wait at least 30 seconds, and power up again.
-[Issue](https://github.com/sinara-hw/Zotino/issues/37).
+[Issue](https://github.com/sinara-hw/Zotino/issues/37).
+
+### Zero/meaningless voltage output on Fastino
+
+Some Fastino may not output any meaningful voltage during testing, usually that means it has no gateware flashed.
+
+Another common symptom of no gateware is that no LEDs are lit up. Whereas if the gateware has been flashed,
+the PG and FD LEDs will be lit green.
+
+You can flash the gateware with a Kasli/Kasli-SoC, be it in the crate or standalone
+(no specific gateware needed for Kasli/SoC):
+
+1. Download the latest `fastino.bin` release from [quartiq/fastino](https://github.com/quartiq/fastino/releases).
+2. Run `git clone https://github.com/quartiq/kasli-i2c.git` and place `fastino.bin` in the kasli-i2c directory.
+3. Connect the Fastino's EEM0 to any available Kasli/Kasli-SoC EEM port
+   ([**do not hot-plug**](../build_test_firmware.md#operating-hints-and-warnings)).
+   You may skip this step if Fastino is connected within a crate.
+4. Power on the standalone Kasli/Kasli-SoC and connect it to the PC via data micro-USB.
+5. Run `nix-shell -p python311Packages.pyftdi`.
+6. Run `cd kasli-i2c; python flash_fastino.py 0 EEM<number> write fastino.bin` where `<number>`
+   is the EEM port number on the Kasli/Kasli-SoC side.
+7. If PG and FD LEDs are lit green, the Fastino is ready.
+
+### Fastino output is 10V
+
+Fastinos by default after power up output 10V on all channels if not driven by the test otherwise.
+Make sure the EEM ports are specified correctly in the JSON and the EEM cable is connected to EEM0 on the Fastino.

src/sw_sup/afws_client.md

@@ -0,0 +1,142 @@
+# AFWS client
+
+This article is intended to help with using the `afws_client` command properly.
+
+## Usage
+
+### What is AFWS
+
+AFWS (ARTIQ FirmWare Service) - a service, that allows building customer tailored firmware and gateware (binaries)
+on M-Labs's servers, and receive these binaries in ready-to-flash format. Subscription to this service also includes
+helpdesk support, and thus is paid on yearly basis (contact sales for prices). It is also typically included when
+purchasing Carrier (Kasli/Kasli-SoC) for a year, or one-time when purchasing standalone cards for existing crate.
+Each variant/carrier requires its own subscription.
+
+### What do I need for obtaining binaries
+
+You'll need to have credentials - username and password, which you can obtain from helpdesk, if you haven't yet.
+Don't forget to specify variant (sticker on top of the crate) that you need to obtain binaries for.
+
+### When do I need to update
+
+In most cases there is no need to update the firmware, unless you encountered a bug and the fix was backported
+to your version. However, if you: changed the layout of the cards - either moved EEM connections, added or
+deleted cards; changed modes/configurations of the cards (e.g. enable/disable SUServo, synchronization, edge counter,
+SED lanes etc.). In such cases, these changes need to be authorized through helpdesk.
+
+### How to
+
+The base command looks like this:
+
+```shell
+afws_client <username> build <afws_directory> <variant>
+```
+
+Where (remove `<` and `>`):
+
+* `<username>` - your username from credentials
+* `<afws_directory>` - the directory/folder, into which you wish to save the binaries
+* `<variant>` - name of the crate/variant. It's optional if you have only one variant in the account
+
+After running this command, it will ask you for the password (the line will remain blank for security reasons).
+If everything matches (username and password are correct, specified variant is in your account and not expired),
+AFWS will start building the firmware, which takes 10-15 minutes. Sometimes there might be some problems, in which
+case don't hesitate to contact helpdesk.
+
+After the build done, the AFWS client will automatically download the binaries into `<afws_directory>`, from which
+you can flash them into your Carrier.
+
+#### View build logs
+
+You may want to view the build logs (for example, in case of problems with configuration).
+For this, add `--log` option after build:
+
+```shell
+afws_client <username> build --log <afws_directory> <variant>
+```
+
+#### Specify version
+
+By default, AFWS client tries to figure out the installed ARTIQ version. However it works only for Kasli, and
+not Kasli-SoC. It also may fail to determine ARTIQ version if you are using AFWS client without ARTIQ installation.
+Additionally, you may want to specify version regardless of installed version.
+In all these cases, you'll need to specify **both** `--major-ver` and `--rev` arguments, so your command
+will look like this:
+
+```shell
+afws_client <username> build --major-ver <MAJOR_VER> --rev <REV> <afws_directory> <variant>
+```
+
+Where:
+
+* `MAJOR_VER` - ARTIQ major version,  either `7` (legacy), `8` (current stable),
+  `9` (current beta) or `10` (experimental with `nac3` compiler)
+* `REV` - revision from respective branch and repository - i.e. commit hash. You may obtain it either from:
+  * [ARTIQ repository](https://github.com/m-labs/artiq) (for Kasli 2.0 and earlier) by
+    [selecting branch](https://docs.github.com/en/repositories/configuring-branches-and-merges-in-your-repository/managing-branches-in-your-repository/viewing-branches-in-your-repository)
+    and selecting `XXX commits` above list of files. From here, the list of commits in specified branch will appear
+    and you will be able to choose the commit and press ["Copy full SHA for YYY"](https://docs.github.com/en/pull-requests/committing-changes-to-your-project/creating-and-editing-commits/about-commits#using-the-file-tree)
+    button in the right side.
+  * [ARTIQ on Zynq repository](https://git.m-labs.hk/M-Labs/artiq-zynq) (for Kasli-SoC). In similar way to GitHub,
+    you can choose branch, commit history and copy SHA1 of the commit.
+
+The branches currently map as following:
+
+* ARTIQ-7 - release-7
+* ARTIQ-8 - release-8
+* ARTIQ-9 - master
+* ARTIQ-10 - nac3
+
+The binaries you receive are "pure" - if the inputs are the same (same version,
+same JSON), the system outputs exactly the same binaries, and if you did it recently, they will be obtained from Nix
+cache (i.e. not rebuilt).
+
+#### Change password
+
+After you received credentials from us, we strongly recommend changing the password as soon as possible via
+`afws_client <username> passwd` command. This command will ask you for existing password and new desired password.
+
+The passwords are stored in a hashed way (i.e. cannot be decrypted back), however it's your responsibility to
+choose good passwords. Just keep in mind, that password may contain only alpha-numeric symbols and underscore
+`[a-zA-Z0-9_]`. If you cannot login, we may reset your password if you email us at helpdesk.
+
+#### Get variants
+
+You may get variants, which are tied to your account by using `get_variants` command:
+
+```shell
+afws_client <username> get_variants
+```
+
+It will ask for password and output the variants and their respective expiry date:
+
+```text
++-----------+-------------+
+|  Variant  | Expiry date |
++-----------+-------------+
+|   test    |  2028-02-08 |
+|   test3   |  2042-08-08 |
++-----------+-------------+
+```
+
+#### Get JSONs
+
+Sometimes you may want to view the JSON description, from which AFWS is building the variant. With the JSON, you can
+later build the firmware by yourself and/or generate device_db file. The command looks like this (variant
+needs to be valid, i.e. not expired and authorized in your account):
+
+```shell
+afws_client <username> get_json [-o <OUT>] [-f] <variant>
+```
+
+Specify output file `-o <OUT>`, if you want to save it directly to file `<OUT>`, use `-f` if you want to force
+overwrite. If you do not specify any of these options, you'll get the JSON description directly in stdin (i.e. in your
+console/terminal).
+
+#### Miscellaneous
+
+You may also specify custom AFWS provider with these options (put them before username):
+
+* `--server SERVER` - server to connect to (default: afws.m-labs.hk)
+* `--port PORT` - port to connect to (default: 80)
+* `--cert CERT` - SSL certificate file used to authenticate server (default: use system certificates)

src/sw_sup/artiq_legacy.md

@@ -1,4 +1,6 @@
-# Building ARTIQ-6 and earlier
+# Building legacy firmware
+
+## Building ARTIQ-6 and earlier
 
 Pre-flake ARTIQ (that is 6 and earlier) requires slightly different steps for building.
 
@@ -6,19 +8,20 @@ Pre-flake ARTIQ (that is 6 and earlier) requires slightly different steps for bu
 
 The following steps need to be done only once.
 
-First we will need to specify older nixpkg version - 21.05. Open ``~/.nix-channels`` with your favorite text editor.
+First we will need to specify older nixpkg version - 21.05. Open `~/.nix-channels` with your favorite text editor.
 
-If there are any ``nixpkgs`` present already, comment them out with ``#``.
+If there are any `nixpkgs` present already, comment them out with `#`.
 
 Then add the following line:
 
-```
+```text
 https://nixos.org/channels/nixos-21.05 nixpkgs
 ```
 
 Save and exit.
 
-Now, we need special ``nix-scripts`` to configure building environment, and a local copy of the artiq repository, in legacy release.
+Now, we need special `nix-scripts` to configure building environment, and a local copy of the artiq repository,
+in legacy release.
 
 ```shell
 mkdir artiq-legacy
@@ -30,6 +33,27 @@ git checkout release-6  # or release-5...
 cd ..
 ```
 
+Keep in mind that ARTIQ-6 scripts have been removed in `nix-scripts`, so you may need to checkout the last commit
+that still has them.
+
+```shell
+cd nix-scripts
+git checkout c590df48e0553a670e18ebf9d02047bfcfddb40d
+cd ..
+```
+
+### If you need ARTIQ-6 on Kasli 2.0.2
+
+Due to a different I2C IO expander chip, ARTIQ-6 firmware may boot on a Kasli 2.0.2, but will not allow Ethernet connection (and possibly DRTIO as well).
+
+For that, before starting the development shell, patch the ARTIQ-6 with the [commit from ARTIQ-7 that added support for it](https://github.com/m-labs/artiq/commit/ce57d6c34680360da95465295044b1c4a51a4864):
+
+```shell
+cd artiq
+git cherry-pick ce57d6c34680360da95465295044b1c4a51a4864
+cd ..
+```
+
 ## Setting up the environment and building firmware
 
 Within ``fish`` shell (others may not work correctly), set up the ARTIQ build environment:
@@ -45,13 +69,17 @@ python -m artiq.gateware.targets.kasli_generic <variant>.json
 ```
 
 If you are building legacy ARTIQ for local use and you want to flash it, use:
+
 ```shell
 artiq_flash -V <variant> -d artiq_kasli --srcbuild
 ```
 
-There's a slight discrepancy from usual command - ``-V <variant>`` option is not present in ARTIQ-7+, but it is necessary here.
+There's a slight discrepancy from usual command - ``-V <variant>`` option is not present in ARTIQ-7+,
+but it is necessary here.
 
-If you want to send the binaries to a customer, there's no need packing up the whole build directory - only ``top.bit``, ``bootloader.bin`` and ``runtime.elf/fbi`` or ``satman.elf/fbi`` are necessary. You can use the ``prep_pkg.py`` script from extras to package them up neatly into a zip file for distributions:
+If you want to send the binaries to a customer, there's no need packing up the whole build directory - only `top.bit`,
+`bootloader.bin` and `runtime.elf/fbi` or `satman.elf/fbi` are necessary. You can use the `prep_pkg.py` script from
+extras to package them up neatly into a zip file for distributions:
 
 ```shell
 python prep_pkg.py -v <variant> -d artiq_kasli/
@@ -61,4 +89,40 @@ Then the customer can use ``artiq_flash`` easily, after extracting the contents:
 
 ```shell
 artiq_flash -V <variant> -d .
-```
+```
+
+## ARTIQ-7
+
+The process of building firmware for ARTIQ-7 is mostly similar to ARTIQ-8, except there are no named RTIO channels
+and no remote reboot functionality on Kasli-SoC. DRTIO set ups are also similar to ARTIQ-8.
+[See reference](../build_test_firmware.md).
+
+### Kasli, Kasli 2.0
+
+```shell
+mkdir <variant>
+cd <variant>/
+nix develop github:m-labs/artiq\?ref=release-7
+# master/standalone only
+artiq_mkfs -s ip 192.168.1.75 kasli.config
+artiq_flash storage -f kasli.config
+artiq_ddb_template -o device_db.py <variant>.json 
+python -m artiq.gateware.targets.kasli_generic <variant>.json 
+artiq_flash --srcbuild -d artiq_kasli/<variant>/
+```
+
+### Kasli-SoC
+
+```shell
+mkdir <variant>
+cd <variant>/
+nix develop git+https://git.m-labs.hk/m-labs/artiq-zynq\?ref=release-7
+artiq_ddb_template -o device_db.py <variant>.json 
+nix build -L --impure --expr 'let fl = builtins.getFlake "git+https://git.m-labs.hk/m-labs/artiq-zynq?ref=release-7"; in (fl.makeArtiqZynqPackage {target="kasli_soc"; variant="[master, standalone, satellite]"; json=<full path to the json description>;}).kasli_soc-[master, standalone, satellite]-sd' 
+# copy `results/boot.bin` to the SD card
+# insert SD card to the Kasli-SoC and boot
+artiq_coremgmt -D 192.168.1.56 config write -s ip 192.168.1.75 # or just place extra/CONFIG.TXT near the boot.bin on SD card
+# update firmware (alternative to copy to SD, if ARTIQ already running)
+artiq_coremgmt config write -f boot result/boot.bin
+# reboot via power supply
+```

src/sw_sup/artiq_start.md

@@ -0,0 +1,44 @@
+# Starting with ARTIQ
+
+This page describes how to start with ARTIQ system for novice users.
+
+## Connecting wires
+
+In most cases the system is shipped with power bricks (PSU), DC splitters and SFPs enough to power and control the
+whole system. Connect them in following order:
+
+1. Insert Ethernet SFP into the SFP0 of the master or standalone Kasli/Kasli-SoC (Carrier)
+2. Connect these SFPs to the router or PC via Ethernet cable (in some cases, optical cable)
+3. Insert optic/direct attach SFPs into the master and satellite Carriers, respective to the numeration,
+   [more info in DRTIO page](drtio.md)
+4. Power on PSU or EEM power module, by inserting C14 cable, attach DC splitters if available
+5. Some cards may have "External power" setting (check the quotation), in this case, insert DC connector into the port
+6. Insert remaining cables into the Carriers (not applicable in case of EEM Power Module).
+
+## Set the network
+
+By default standalone/master Carriers arrive with 192.168.1.75/24 set as their static address.
+Carrier will try to acquire this address from your router, and in case of failure, they will be just unavailable
+from the network. Check the following articles for troubleshooting network issues:
+
+* [Networking](networking.md)
+* [Official docs](https://m-labs.hk/artiq/manual/configuring.html)
+
+## Run first experiment via artiq_run
+
+Before diving in to the repository experiments management and scheduling, it is essential to try run your first
+experiment via most basic way - `artiq_run`. For this you need to enter your ARTIQ environment (console) and run:
+
+```shell
+artiq_run --device-db path/to/device_db.py path/to/experiment.py
+```
+
+In case your directory contains relevant `device_db` file, you may omit the `--device-db path/to/device_db.py` part.
+To check this, you may run `ls .` and check if it is in the list.
+
+On pre-installed NUCs, the ARTIQ commands are available everywhere, and you just need to run them.
+If you have Nix package manager or NixOS, you will just need to enter the shell with
+`nix develop github:m-labs/artiq\?ref=release-8`. If you have installed ARTIQ with Conda, you will need to activate
+the environment with `conda activate <name of the environment with ARTIQ>`.
+
+You may check for experiments in the [official docs](https://m-labs.hk/artiq/manual/getting_started_core.html).

src/sw_sup/clocking.md

@@ -0,0 +1,84 @@
+# Clocking
+
+This page describes ways to set up clocking. Official documentation references:
+
+* [Carrier configuration](https://m-labs.hk/artiq/manual/core_device.html#clocking)
+* Devices' [available options](https://m-labs.hk/artiq/manual/core_drivers_reference.html), [Urukul example](https://m-labs.hk/artiq/manual/core_drivers_reference.html#artiq.coredevice.urukul.CPLD)
+
+In general, any RF card and Carriers require some clock source. Most of them have both internal clock signal generator
+and external MMCX and/or SMA connectors to accept the signal. By default the internal clock is used for Carriers,
+and external MMCX is used for RF cards. However, internal clock may be not good enough for the end-user application,
+so the end-user may want to change the clock source at any time.
+
+## Kasli/Kasli-SoC
+
+For setting clocking on the Carriers you will just need to set `rtio_clock` in the core device config. Be aware, that
+setting any external clocking will require appropriate external clock signal to be supplied into `CLK IN` SMA connector
+on the front panel to boot. Therefore, firmware will be halted, the `ERR` LED will be red and **no Ethernet connection
+will be established**. Since the clock signal is distributed by DRTIO, there is generally no need in setting it up on
+satellites.
+
+If you have connection with the Carrier, you can use coremgmt command:
+
+```shell
+artiq_coremgmt config write -s rtio_clock <OPTION>
+```
+
+For available options refer to the official documentation (at the top of the page).
+
+### Setting clocking for Kasli without connection
+
+For RISC-V/legacy Kasli you will just need to connect your PC to the Kasli via _data_ micro-USB cable and run the
+following:
+
+```shell
+# you may also change IP setting here, the default is 192.168.1.75
+artiq_mkfs kasli.config -s ip xx.xx.xx.xx -s rtio_clock <OPTION> 
+# but don't forget to update `core_addr` variable in the device_db.py file if changed
+artiq_flash storage -f kasli.config
+```
+
+Be aware that all other settings will be **erased**, so you may need to restore them in the `artiq_mkfs` command.
+
+### Setting clocking for Kasli-SoC without connection
+
+For this you will need to eject micro-SD card from the Kasli-SoC, either
+by [removing the top panel](../img/rack_urukul_switch_access.jpg) or by gently pulling the Kasli-SoC from the crate,
+possibly with other cards. In any case, be cautious and follow
+the [warnings](../build_test_firmware.md#operating-hints-and-warnings). Once accessed the micro-SD card, simply
+add `rtio_clock=<OPTION>` on a new line to the existing `CONFIG.TXT` file and save it, or if it is absent, just download
+default-ish [CONFIG.TXT](../extra/CONFIG.TXT) to the SD card near (same level) `boot.bin` file.
+
+## RF Devices (Except Clocker)
+
+If you want to set the clock source specifically for RF devices, you will just need to update the JSON file
+and [regenerate device_db.py file](device_db.md).
+
+For example for Urukul, you will just need to check the manual for available variants and apply them in the JSON file,
+so Urukul entry may look like this:
+
+```json
+{
+  "type": "urukul", 
+  "dds": "ad9910", 
+  "ports": [1, 2], 
+  "refclk": 10e6, 
+  "clk_sel": 1
+}
+```
+
+So basically, `clk_sel` and `refclk` fields need to be set:
+
+* `clk_sel` selects the source clock, where 0 - internal 100MHz XO; 1 - front-panel SMA; 2 internal MMCX
+* `refclk` - reference clock frequency in Hz
+
+These settings may need to be checked with official manual and may differ from device to device.
+
+## Clocker card
+
+Main page: [clocker.md](../hw/clocker.md)
+
+Clocker card allows to distribute clock signal up to 1 GHz without additional software setup. Therefore, there is no way
+to set it to generate signal, which would be different from input. The only setup allowed is to set to accept signal
+from `EXT`/`INT` ports, front-panel SMA or card's MMCX ports respectively, by switching the `CLK SEL` switch on the
+card ![Clocker board](../img/clocker_ref.jpg).

src/sw_sup/device_db.md

@@ -0,0 +1,38 @@
+# device_db.py File
+
+`device_db.py` file contains the database of the devices and their respective interfaces within the firmware/gateware.
+It is generated from JSON description file and tied with the configuration and the gateware.
+
+## Generating the device_db.py File
+
+In some cases you may need to regenerate `device_db.py`, like switching clock source or changing the configuration.
+Also it is must-do in most cases once firmware/gateware is being updated (for example, when you add, move or remove EEM
+cards), and in case DRTIO layout changed.
+Luckily, it is fairly easy to do. For standalone systems:
+
+```shell
+artiq_ddb_template -o device_db.py <standalone variant>.json
+```
+
+For DRTIO systems:
+
+```shell
+artiq_ddb_template -o device_db.py -s 1 <satellite1>.json -s 2 <satellite2>.json <...> -s N <satelliteN>.json <master>.json
+```
+
+Keep in mind, that for DRTIO systems the real SFP connections at master should match the numbers at
+the `artiq_ddb_template` command, or routing table if specified.
+
+Here is mapping for master Kasli 2.0 (without routing table):
+
+* SFP0 - Ethernet
+* SFP1 - Satellite 1
+* SFP2 - Satellite 2
+* SFP3 - Satellite 3
+
+For master Kasli-SoC (without routing table):
+
+* SFP0 - Satellite 1
+* SFP1 - Satellite 2
+* SFP2 - Satellite 3
+* SFP3 - Satellite 4

src/sw_sup/drtio.md

@@ -4,19 +4,21 @@ This page intends to help users solve problems with their DRTIO systems.
 
 ## Description (from user experience)
 
-[Distributed Real Time Input/Output](https://m-labs.hk/artiq/manual/drtio.html) - allows almost seamlessly connecting several satellites to one master crate,
-so that all the crates can be controlled as one whole crate. The connection between the crates is done either by passive copper
-direct attach cables (suitable for one-crate setups) or optical fibers SFP+ adapters (suitable for multiple crates that 
-can be distributed up to [several kilometers](https://github.com/m-labs/artiq/issues/2022)). The DRTIO protocol is not
-compatible with Ethernet, and moreover, satellites do not have any network access and can be controlled only by master.
-However, both star (2 levels) and tree topologies are supported as well, 
-with default one being the star (one master and up to 3-4 directly connected satellites), and if any chaining is needed, the
-routing table setup is needed.
-To switch between satellite/master/standalone variants you just need to flash appropriate firmware, and set the respective `base`
-field in the JSON description.
+[Distributed Real Time Input/Output](https://m-labs.hk/artiq/manual/drtio.html) - allows almost seamlessly connecting
+several satellites to one master crate, so that all the crates can be controlled as one whole crate.
+The connection between the crates is done either by passive copper direct attach cables (suitable for one-crate setups)
+or optical fibers SFP+ adapters (suitable for multiple crates that can be distributed up to
+[several kilometers](https://github.com/m-labs/artiq/issues/2022)). The DRTIO protocol is not compatible with Ethernet,
+and moreover, satellites do not have any network access and can be controlled only by master. However,
+both star (2 levels) and tree topologies are supported as well, with default one being the star (one master and up to
+3-4 directly connected satellites), and if any chaining is needed, the
+[routing table setup](https://m-labs.hk/artiq/manual/using_drtio_subkernels.html#configuring-the-routing-table)
+is needed. To switch between satellite/master/standalone variants you just need to flash appropriate firmware,
+and set the respective `base` field in the JSON description.
 
 The master will attempt to connect the satellite whenever it sees that there are SFPs plugged in. For this purpose,
 it will _ping_ the satellite until it establishes the connection. This connection process can be observed from the logs:
+
 ```rust
 // successful connection
 [ 5385.011286s] INFO(runtime::rtio_mgt::drtio): [LINK#1] link RX became up, pinging
@@ -30,18 +32,34 @@ it will _ping_ the satellite until it establishes the connection. This connectio
 [   115.076772s] ERROR(runtime::rtio_mgt::drtio): [LINK#1] ping failed
 ```
 
-During the connection, the clock signal is being distributed, effectively making the clocks across crates to be synchronized.
-
+During the connection, the clock signal is being distributed, effectively making the clocks across
+crates to be synchronized.
 
 ## Common problems
 
 ### Master and satellite do not connect with each other
 
-* Shady cables and SFP adapters are often the cause, use the adapters from reputable sources, or better, use the one we ship. 
-  You may also contact our helpdesk to get help in choosing the right adapters if needed.
-* The adapter is not pushed until the end. You shouldn't be able to pull out the adapters without pulling the petals/handles.
-* The fiber is not properly connected - you shouldn't be able to pull it out without squeezing the handle. Also the optics
-  may be dirty or damaged.
+During execution of experiments, may result in following error:
+
+```pycon
+artiq.coredevice.exceptions.RTIODestinationUnreachable: RTIO destination unreachable, output, at XXXXX mu, channel 0xXXX:DEV0
+```
+
+* Shady cables and SFP adapters are often the cause, use the adapters from reputable sources, or better,
+  use the one we ship. You may also contact our helpdesk to get help in choosing the right adapters if needed.
+* The adapter is not pushed until the end. You shouldn't be able to pull out the adapters without
+  pulling the petals/handles.
+* The fiber is not properly connected - you shouldn't be able to pull it out without squeezing the handle.
+  Also the optics may be dirty or damaged.
 * Wrong setups - master to master, standalone to standalone. Messing up with SFP ports generally makes it unusable,
   but the connection should be established in most cases.
 * The fiber adapters are not symmetrical - if one end has 1270/1330 label, another one should be 1330/1270.
+* Connection race condition - rebooting one or both master and satellite may help.
+* Mismatch with real SFP port and the one, specified during device_db generation: re-attach the SFP ports according to
+  device_db or regenerate device_db according to SFP port attachment.
+  [More info at the device_db article.](device_db.md)
+
+### Master-satellite interrupted/unstable connection
+
+This often happens due to overheating issues. Check if the Kasli/SoC fans are working properly and
+try installing rack fans to increase the air flow.

src/sw_sup/flashing_firmware.md

@@ -6,15 +6,18 @@ Here are some extra steps needed for flashing the firmware.
 
 ### Windows
 
-From the [official manual](https://m-labs.hk/artiq/manual/installing.html#configuring-openocd):
+From the [official manual](https://m-labs.hk/artiq/manual/flashing.html#installing-and-configuring-openocd):
 
 On Windows, a third-party tool, Zadig, is necessary. Use it as follows:
+
 1. Make sure the FPGA board’s JTAG USB port is connected to your computer.
 2. Activate Options → List All Devices.
-3. Select the “Digilent Adept USB Device (Interface 0)” or “FTDI Quad-RS232 HS” (or similar) device from the drop-down list.
+3. Select the “Digilent Adept USB Device (Interface 0)” or “FTDI Quad-RS232 HS” (or similar)
+   device from the drop-down list.
 4. Select WinUSB from the spinner list.
 5. Click “Install Driver” or “Replace Driver”.
 6. After above steps done, you may see the devices in the Device Manager:
    ![after_zadig_devices.png](../img/win32/after_zadig_devices.png)
 
-You may need to repeat these steps every time you plug the FPGA board into a port where it has not been plugged into previously on the same system.
+You may need to repeat these steps every time you plug the FPGA board into a port where it has not been
+plugged into previously on the same system.

src/sw_sup/moninj.md

@@ -3,9 +3,8 @@
 The official documentation lacks the description of MONitor/INJector, but it is a common mistake when running the ARTIQ-7.
 Basically it is a service that consists of two parts - one runs on the host PC, another on the Kasli.
 It allows to watch and control the state of the devices, so you can see it on the dashboard.
-That's why the dashboard may emit errors about not working moninj. To fix this, you just need [to run it with Kasli's IP](https://m-labs.hk/artiq/manual/utilities.html#moninj-proxy):
+That's why the dashboard may emit errors about not working moninj. To fix this, you just need [to run it with Kasli's IP](https://m-labs.hk/artiq/manual/utilities.html#module-artiq.frontend.aqctl_moninj_proxy):
 
 ```shell
 aqctl_moninj_proxy CORE_ADDRESS
 ```
-

src/sw_sup/networking.md

@@ -6,40 +6,49 @@ a-la `I can't connect, please help`.
 ## Common problems
 
 1. `device_db.py` has misleading `core_addr` address.
-2. PC and the crate are in different subnets. They should be in the same network. Also you may want to directly attach the Kasli to the PC.
+2. PC and the crate are in different subnets. They should be in the same network. Also you may want to directly
+   attach the Kasli to the PC.
 3. Network restrictions/problems on your router, either by IP, MAC, protocols or anything else.
-4. Wrong configuration of the Kasli. Change IP or MAC address to correspond your network. For ARTIQ-8, add 
-   network mask to the `ip` setting on Kasli, like `192.168.1.75/24`.
-5. Incompatible Ethernet cables/SFP RJ45. Try different cables and SFP adapters. 
+4. Wrong configuration of the Kasli. Change IP or MAC address to correspond your network. For ARTIQ-8 and later, add
+   network mask to the `ip` setting on Kasli (not applicable for Kasli-SoC), like `192.168.1.75/24`.
+5. Incompatible Ethernet cables/SFP RJ45. Try different cables and SFP adapters.
    We usually test them with CAT6 cables, but lower categories should be supported too.
 6. SFP or Ethernet are not pushed til the end.
 7. Some weird bugs in Vivado, leading to not working SFP on certain combinations of builds and Kaslis (very rare)
-8. Running configured for external reference Kasli without external reference clock signal 
-9. Using legacy firmware with newer hardware. ARTIQ-6 doesn't support Kasli v2.0.2
+8. Running configured for external reference Kasli without external reference clock signal
+9. Using legacy firmware with newer hardware. ARTIQ-6 doesn't support Kasli v2.0.2 (at least without the patch mentioned in the [legacy](artiq_legacy.md) article)
+10. Some other device in your network already reserved the configured IP address.
 
 ## Ways to diagnose
 
 1. `ping` the device. If destination is unreachable, than it is either didn't connect to the network
-    or connected to different address. If the packets just do not respond then it is not as clear, we cannot know all the truth.
+    or connected to different address. If the packets just do not respond then it is not as clear,
+    we cannot know all the truth.
 2. See the SFP0 LED
 3. See the ERR LED
 4. [UART logs](uart_logs.md)
 5. `nmap` and `arp` to scan your network to help your Kasli get discovered. May be restricted in your network.
-6. Directly connect your Kasli to the PC via Ethernet and set up networking on the PC: `ip addr change 192.168.1.0/24 dev eth0`
+6. Directly connect your Kasli to the PC via Ethernet and set up networking on the PC:
+   `ip addr change 192.168.1.0/24 dev eth0`
 7. Become a router and capture all the packets when your Kasli tries to connect to the network.
-
+8. Turn off the Carrier/Kasli and `ping` the configured IP address. If it pings, then you'll need either set different
+   IP address on your Carrier or somehow deal with that other device - remove,
+   assign different address, move to other network etc.
 
 ## Direct connection
 
 Sometimes it is neccessary to connect your Kasli/Kasli-SoC (Carrier) directly to the PC/NUC. For example, your Kasli-SoC
 may be configured for the wrong network. In order to do this, you will just need to:
+
 1. Connect Carrier via Ethernet directly to the NUC/PC
 2. Set the network settings (example for default 192.168.1.75 Carrier setting):
-    ```
+
+    ```text
     IPv4 method: Manual
     Address: 192.168.1.0
     Netmask: 255.255.255.0
     Gateway: 192.168.1.0
     DNS, Routes - Auto
     ```
-   ![gnome_direct_conn_settings.png](../img/gnome_direct_conn_settings.png)
+
+   ![gnome_direct_conn_settings.png](../img/gnome_direct_conn_settings.png)

src/sw_sup/pycharm.md

@@ -0,0 +1,17 @@
+# Integration with PyCharm®
+
+It's fairly possible to integrate PyCharm with ARTIQ on Windows.
+
+## MSYS2
+
+Below is an example configuration, change it according your installation.
+
+1. Set System Interpreter to MSYS2 CLANG64 one (pip packages are not supported):
+    ![PyCharm interpreter settings example](../img/win32/pycharm_interpreter.png)
+2. Set Terminal to use MSYS2 CLANG64 one:
+    ![PyCharm terminal settings example](../img/win32/pycharm_terminal.png)
+
+After this you will be able to look up definitions from ARTIQ and use convenient integrated Terminal to run `artiq_run`.
+
+_PyCharm is a registered trademark of JetBrains s.r.o.. For license information, please refer to the
+JetBrains website or the product documentation._

src/sw_sup/setup_build_pc.md

@@ -0,0 +1,78 @@
+# Setup your PC for building ARTIQ firmware
+
+This page should guide you through building the firmware on your own PC.
+Unfortunately, the building process is not possible on Windows natively (nor MSYS2),
+but you can use [WSL](https://learn.microsoft.com/en-us/windows/wsl/install).
+
+## Prerequisites
+
+You should have a Linux with `nix` and `git` installed. For this purpose you may want to consider NixOS,
+though it is hard way for everything else. You should have at least 70+ GB of free space (better 100+ GB) on
+your `/opt` or `/` - most of this space will be taken by Vivado.
+
+## Installation
+
+1. Install Vivado 2022.2 from [Vivado archive](https://www.xilinx.com/support/download/index.html/content/xilinx/en/downloadNav/vivado-design-tools/archive.html)
+   into `/opt`.
+2. Check that `ls -al /opt/Xilinx/Vivado/2022.2/settings64.sh` exists and has read and execute permissions for all:
+
+    ```shell
+    $ ls -al /opt/Xilinx/Vivado/2022.2/settings64.sh
+    -rwxr-xr-x 1 nobody nogroup 245 Dec 17  2022 /opt/Xilinx/Vivado/2022.2/settings64.sh
+    ```
+
+3. Add following into the `~/.local/share/nix/trusted-settings.json`, by `mkdir -p ~/.local/share/nix/ && nano ~/.local/share/nix/trusted-settings.json`
+   or with your favorite way (don't forget to save - Ctrl+O in `nano`):
+
+    ```json
+    {
+       "extra-sandbox-paths":{
+          "/opt":true
+       },
+       "extra-substituters":{
+          "https://nixbld.m-labs.hk":true
+       },
+       "extra-trusted-public-keys":{
+          "nixbld.m-labs.hk-1:5aSRVA5b320xbNvu30tqxVPXpld73bhtOeH6uAjRyHc=":true
+       }
+    }
+    ```
+
+4. Enable flakes in Nix and add `/opt` to sandbox e.g. adding following to the `nix.conf`
+   (for example `~/.config/nix/nix.conf` or `/etc/nix/nix.conf`):
+
+    ```text
+    experimental-features = nix-command flakes
+    extra-sandbox-paths = /opt
+    ```
+
+5. On Ubuntu, the Nix will conflict with Apparmor. You'll need to disable Apparmor for Nix,
+   or for the whole system (you can also delete Apparmor completely, but be careful with it).
+
+From here, you should be able to enter ARTIQ development shell directly from URL, or by cloning the repository.
+The later will allow you to edit the source code in case of need.
+
+For example for Kasli 2.0:
+
+```shell
+git clone https://github.com/m-labs/artiq.git
+cd artiq
+nix develop #boards
+```
+
+For Kasli-SoC:
+
+```shell
+git clone https://git.m-labs.hk/M-Labs/artiq-zynq.git
+cd artiq-zynq
+nix develop
+```
+
+For building instructions for your JSON, please refer to the [build and test instructions](../build_test_firmware.md).
+The reference uses commands like `nix develop github:m-labs/artiq\?ref=release-8#boards` and `nix develop git+https://git.m-labs.hk/m-labs/artiq-zynq\?ref=release-8`.
+You may safely skip such commands if you entered the development shell (`nix develop`) from cloned git repository.
+
+If you want to update the source files, you may use `git pull origin master --rebase`.
+Please refer to the [git documentation](https://www.git-scm.com/docs) or other resources of your choice
+if you are unfamiliar with `git`. You may also use GUI git tools, like the one integrated into JetBrains IDEs
+(PyCharm, Intellij and others), VS Code, Sublime Merge or others.

src/sw_sup/software_support.md

@@ -7,4 +7,4 @@ In the future, it may be revised and added to the official ARTIQ manual.
 
 I hope that helps!
 
-![curious_doge.jpg](../img/curious_doge.jpg)
+![curious_doge.jpg](../img/curious_doge.jpg)

src/sw_sup/uart_logs.md

@@ -4,8 +4,8 @@ Used for network, booting, and most other issues debugging.
 
 ## How to get them
 
-First, connect your Kasli/SoC to the PC with a data micro-USB cable. Once you turn on the device, wait at least 15 seconds
-until its fully loaded.
+First, connect your Kasli/SoC to the PC with a data micro-USB cable. Once you turn on the device,
+wait at least 15 seconds until its fully loaded.
 
 ### Development shell
 
@@ -15,6 +15,8 @@ until its fully loaded.
 
 ### Older Nix and other Linuxes
 
+Ensure your user is in `dialout` group.
+
 1. Install `cutecom` via `nix-shell -p cutecom` or your package manager
 2. Run `cutecom` and follow settings from the picture: ![uart_cutecom.png](../img/uart_cutecom.png)
 3. Restart the device with `artiq_flash start`, or by power-cycling it (wait 30 seconds before turning on)
@@ -28,7 +30,7 @@ manipulations, as shown below.
 #### Drivers
 
 Use following instructions to set correct drivers for the COM ports.
-At choosing FTDI drivers stage you may have longer list of drivers. 
+At choosing FTDI drivers stage you may have longer list of drivers.
 In that case, choose respective `USB Serial Converter X` (A for 0, B for 1, C for 2, D for 3) driver. In case you cannot
 locate the devices, they may appear in the _Other devices_ section:
 ![other_devices_section.png](../img/win32/other_devices_section.png)
@@ -42,9 +44,9 @@ You may also need to reboot your PC after doing this.
 6. ![com_driver_set5.png](../img/win32/com_driver_set5.png)
 7. ![com_driver_set6.png](../img/win32/com_driver_set6.png)
 
-If you are here after [flashing firmware](flashing_firmware.md) stage, you may fail to see the devices in the described locations.
-If you see them in the `Universal Serial Bus devices` section, you may need just to uninstall the third _Quad_ device and reconnect the
-Kasli/Kasli-SoC to the PC.
+If you are here after [flashing firmware](flashing_firmware.md) stage, you may fail to see the devices in the described
+locations. If you see them in the `Universal Serial Bus devices` section, you may need just to uninstall
+the third _Quad_ device and reconnect the Kasli/Kasli-SoC to the PC.
 
 #### Connecting with PuTTY
 
@@ -54,4 +56,4 @@ Kasli/Kasli-SoC to the PC.
    ![putty_com_settings.png](../img/win32/putty_com_settings.png)
 3. Connect to every COM port you find on connecting the device (usually connecting the the third port is enough)
 4. Restart the device with `artiq_flash start`, or by power-cycling it (wait 30 seconds before turning on)
-5. See which COM port produces meaningful output and close others :)
+5. See which COM port produces meaningful output and close others :)