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55 Commits

Author SHA1 Message Date
Anton
469765a4e5 Apply permutation 2021-10-08 00:36:40 +02:00
Anton
9e85c9e2b6 CSR/CSC: Provide constructor for unsorted but otherwise valid data 2021-10-03 14:59:28 +02:00
Paul Jakob Schroeder
e6e7efba8a COO: add push_matrix fn 
- This function allows one to add entire dense matrices
to a sparse COO matrix.
- Added a small mention of this new function in the
example in lib.rs
 2021-06-08 10:05:50 -04:00
Andreas Longva
66b9185ec1 Test CsrMatrix::row_iter(_mut) and CscMatrix::col_iter(_mut) 2021-02-01 14:38:11 +01:00
Andreas Longva
1ebb612d46 Test Csr/CscMatrix::{index_entry, index_entry_mut, get_entry, get_entry_mut} 2021-02-01 09:27:33 +01:00
Andreas Longva
0936c4fad9 Add tests for Csr/CscMatrix::identity 2021-02-01 08:52:13 +01:00
Andreas Longva
7473d54d74 rustfmt 2021-01-26 10:11:24 +01:00
Andreas Longva
7b6333e9d1 Rename some Csr/Csc/SparsityPattern methods 2021-01-26 10:11:24 +01:00
Andreas Longva
0bee9be6c7 Extend CSC/CSR * Dense to work for combinations of ref and owned 2021-01-26 10:11:24 +01:00
Andreas Longva
7a083d50f7 Increase tolerance to ensure tests pass 
It's possible that some particularly bad inputs cause
severe loss of significance in the triangular solves.
This is exacerbated by the fact that the way we test
the (residual) error is also prone to loss of significance,
so that the error measure itself is problematic.

We could maybe improve this in the future by using arbitrary-
precision arithmetic to remove some sources of error and testing
against appropriate bounds.
 2021-01-26 10:11:24 +01:00
Andreas Longva
31c911d4fb Change proptest strategies to use DimRange 2021-01-26 10:11:24 +01:00
Andreas Longva
9cd1540496 Improve and test proptest generators 
Due to a bug in proptest, we were required to pull in and modify
parts of proptest::strategy::Shuffle. Once the below PR has been merged
and released on crates.io, we can remove this code.

https://github.com/AltSysrq/proptest/pull/217
 2021-01-26 10:11:24 +01:00
Andreas Longva
3eab45d81b Replace spmm_pattern with spmm_{csr/csc}_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva
e655fed4fa Replace Arc<SparsityPattern> with SparsityPattern 
After much deliberation, I have come to the conclusion that the
benefits do not really outweigh the added complexity. Even though
the added complexity is relatively minor, it makes it somewhat
more complicated to inter-op with other sparse linear algebra
libraries in the future.
 2021-01-26 10:11:24 +01:00
Andreas Longva
9b46a43c7f Add proptest regressions 2021-01-26 10:11:24 +01:00
Andreas Longva
fc0c22bf78 Add CscCholesky::solve and ::solve_mut 2021-01-26 10:11:24 +01:00
Andreas Longva
3b1303d1e0 Implement lower/upper triangular solve for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva
5869f784e5 Implement CsrMatrix/CscMatrix::filter and associated helpers 
Includes ::lower_triangle(), ::upper_triangle() and
::diagonal_matrix().
 2021-01-26 10:11:24 +01:00
Andreas Longva
3453577a16 Use matrixcompare 0.2 with prop_assert_matrix_eq in Cholesky test 2021-01-26 10:11:24 +01:00
Andreas Longva
aad2216c56 Initial port from nalgebra::CsCholesky factorization to CscCholesky 2021-01-26 10:11:24 +01:00
Andreas Longva
885480a634 Implement CSR/CSC * Dense std operations 2021-01-26 10:11:24 +01:00
Andreas Longva
b7a7f967b8 Implement Neg, Div, DivAssign for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva
0b4356eb0e Implement Sub for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva
7aeb663165 Implement matrix-scalar multiplication 2021-01-26 10:11:24 +01:00
Andreas Longva
dbdf5567fc Implement arithmetic operations for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva
66cbd26702 Add prealloc suffix to spmm_csr and spadd_csr 
The suffix is intended to communicate that these methods
assume `preallocated` storage, i.e. they try to store the
result in a matrix which already has the correct sparsity
pattern for the operation.
 2021-01-26 10:11:24 +01:00
Andreas Longva
4af3fcbdd3 Reorder parameters in ops to intuitive order 2021-01-26 10:11:24 +01:00
Andreas Longva
fe8592fde1 Refactor ops to use new Op type instead of separate Transpose flag 2021-01-26 10:11:24 +01:00
Andreas Longva
c6a8fcdee2 Simplify spadd_pattern API and name 2021-01-26 10:11:24 +01:00
Andreas Longva
6a100c085a Add proptest regressions 2021-01-26 10:11:24 +01:00
Andreas Longva
b25848838b Implement CSR-CSR matrix multiplication 2021-01-26 10:11:24 +01:00
Andreas Longva
d9cfe5cb3e Improve dimension assertions for spadd_csr 2021-01-26 10:11:24 +01:00
Andreas Longva
2d534a6133 Implement spmm_csr 2021-01-26 10:11:24 +01:00
Andreas Longva
9db17f00e7 Implement spmm_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva
c4285d9fb3 remove spmv_coo 2021-01-26 10:11:24 +01:00
Andreas Longva
41941e62c8 Implement CSR-CSR addition 2021-01-26 10:11:24 +01:00
Andreas Longva
830df6d07b Implement Csr/CscMatrix::transpose() 2021-01-26 10:11:24 +01:00
Andreas Longva
8b7b836a37 Make CsrMatrix/CscMatrix::pattern() return reference 2021-01-26 10:11:24 +01:00
Andreas Longva
4420237ede Implement spadd_build_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva
7c68950614 Simplify transposition API in spmm_csr_dense 2021-01-26 10:11:24 +01:00
Andreas Longva
1ae03d9ebb Implement spmm_csr_dense 2021-01-26 10:11:24 +01:00
Andreas Longva
95ee65fa8e Implement remaining conversions (missing docs) 2021-01-26 10:11:24 +01:00
Andreas Longva
6083d24dd6 Add csr, csc, sparsity_pattern proptest generators (untested) 2021-01-26 10:11:24 +01:00
Andreas Longva
41ce9a23df Remove CooMatrix::to_dense() and Scalar trait bound, add ::nnz() 2021-01-26 10:11:24 +01:00
Andreas Longva
f20e764edc nalgebra-sparse: Move slow tests and imports into 'slow' child module 
This way it's easier to prevent accidental unused imports when
running tests without the slow-tests feature.
 2021-01-26 10:11:24 +01:00
Andreas Longva
54329146c9 Initial COO <-> Dense conversion routines 2021-01-26 10:11:24 +01:00
Andreas Longva
7260f05b07 Improved CooMatrix proptest strategies 2021-01-26 10:11:24 +01:00
Andreas Longva
46442d6060 Initial basic proptest support for CooMatrix (missing tests) 2021-01-26 10:11:24 +01:00
Andreas Longva
ec339f9108 Implement CSC matrix basic API 
The CSC matrix API mirrors the CSR matrix API. However, there
are subtle differences throughout (both in the available
methods and the implementation) that I believe makes any attempt
to avoid the duplicate effort futile.
 2021-01-26 10:11:24 +01:00
Andreas Longva
4cd47327c9 Test that CSR::disassemble avoids cloning when possible 2021-01-26 10:11:24 +01:00