Commit Graph

189 Commits

Author SHA1 Message Date
Hantao Hui 1cc5c7eba6 fix doc typo 2021-11-23 16:17:06 +01:00
Hantao Hui 920bd75b82 fix typo 2021-11-18 11:42:47 +01:00
Hantao Hui 332fe8c0e4 update loading matrix market, including:
1. Several renamings
2. removed unnecessary traits
3. added support for dense matrix
4. removed unnecessary comparison when reading data line by line. (e.g.
   only read header line once)
2021-11-17 16:41:10 +01:00
Hantao Hui 7f9128c92d added reading matrix market data to sparse coomatrix 2021-11-02 10:59:59 +01:00
Anton 89416baace Bring apply permutation function back to serial.rs 2021-10-20 20:28:38 +02:00
Anton 752d1f300d Permute values without unnecessary allocation 2021-10-20 01:50:42 +02:00
Anton f90bb8d64a Fix wrong csr-constructor call 2021-10-18 10:59:51 +02:00
Anton 86eeb192db Add module for unit test data examples 2021-10-17 22:29:59 +02:00
Anton 4b41be75b0 Add tests for some csr matrix related failure cases 2021-10-14 23:18:34 +02:00
Anton 4a97989738 Improve checking requirements for sorting column indices 2021-10-11 23:01:12 +02:00
Anton 469765a4e5 Apply permutation 2021-10-08 00:36:40 +02:00
Anton a2a55cddca Check first and last offsets before sorting column indices 2021-10-05 00:07:04 +02:00
Anton 9e85c9e2b6 CSR/CSC: Provide constructor for unsorted but otherwise valid data 2021-10-03 14:59:28 +02:00
Sébastien Crozet d1d7422761 Bump the version of nalgebra-glm, nalgebra-lapack, and nalgebra-sparse. 2021-08-08 18:07:34 +02:00
Sébastien Crozet db63f6c031 Release v0.29.0 2021-08-08 17:54:35 +02:00
Sébastien Crozet 0b9a1acea5 Fix nalgebra-sparse. 2021-08-04 18:20:55 +02:00
Sébastien Crozet dd6c40016e Remove the Copy requirement from SimdRealField. 2021-08-04 17:34:25 +02:00
Sébastien Crozet 492ed8cc8d Fix nalgebra-sparse 2021-08-03 10:58:23 +02:00
Sébastien Crozet 8c6ebf2757 Implement the single-allocator-trait approach. 2021-08-02 18:41:46 +02:00
Sébastien Crozet d34fed45bc Merge branch 'dev' into ub3 2021-08-02 18:40:33 +02:00
Violeta Hernández 2243a11e89 Added some derives 2021-07-29 12:33:45 -05:00
Rémi Lauzier c35f792b4f
Fix some warnings 2021-07-27 19:24:55 -04:00
Violeta Hernández a753d84aae cargo fmt 2021-07-17 21:50:06 -05:00
Violeta Hernández c01d591478 We have reached compilation! 2021-07-17 13:01:03 -05:00
Violeta Hernández 87fe2b30df Checkpoint #9 2021-07-16 23:17:56 -05:00
Violeta Hernández c3f869e017 Checkpoint #8 2021-07-16 01:53:28 -05:00
Crozet Sébastien ca1297acfb Release v0.28.0 2021-07-11 17:42:45 +02:00
Violeta Hernández 6e96c28ad9 Trivial doc comment improvements 2021-07-06 21:05:25 -05:00
Paul Jakob Schroeder e6e7efba8a COO: add push_matrix fn
- This function allows one to add entire dense matrices
to a sparse COO matrix.
- Added a small mention of this new function in the
example in lib.rs
2021-06-08 10:05:50 -04:00
Malte Tammena 9eb9ad603f Add `get_mut` annotations (second try) 2021-06-07 17:24:43 +02:00
Malte Tammena 38e9a5da33 Annotate `get_mut`/`slice`-like functions with `#[must_use]` 2021-06-07 17:15:36 +02:00
Malte Tammena 9fb963017f Simplify default `#[must_use]` annotation 2021-06-07 16:34:03 +02:00
Malte Tammena 42a2c74571 Finish initial must_use annotations 2021-06-06 15:28:37 +02:00
Crozet Sébastien dfc8ad3d6a Release v0.27.0 2021-06-02 15:15:17 +02:00
Dave Farnham 79ef862fe9 Fix docs on csc_data(), csc_data_mut() 2021-05-09 14:58:26 -06:00
Sébastien Crozet d67aec80fd
Merge pull request #885 from chammika-become/coo-reserve
CooMatrix::reserve added
2021-05-09 16:58:43 +02:00
Andreas Longva b85335bd9c Update matrixcompare version to 0.3.0
Fixes some warnings produced by earlier versions since Rust 1.51.
See https://github.com/Andlon/matrixcompare/pull/5 for more details.

Note that we only update dev-dependencies, so there is no API breakage.
2021-05-07 09:23:46 +02:00
Chammika Mannakkara 5d638a32b8 correct all gramatical mistakes pointed by @Andlon 2021-05-04 12:29:25 +09:00
Chammika Mannakkara c420afde9e CooMatrix::reserve added 2021-05-02 20:43:16 +09:00
Crozet Sébastien c5c6c139ab Release v0.26.0 2021-04-12 16:15:08 +02:00
Crozet Sébastien 24d546d3b6 Rename generic parameter N -> T 2021-04-11 13:57:54 +02:00
Crozet Sébastien 7fdac06365 Fix cargo metadata to allow publishing nalgebra-lapack and nalgebra-sparse. 2021-03-01 14:49:03 +01:00
Crozet Sébastien 5b9b94c610 Release v0.25.0 2021-03-01 14:25:29 +01:00
Crozet Sébastien 80aa4faa38 Fix tests for nalgebra-sparse. 2021-03-01 12:42:54 +01:00
Crozet Sébastien 6cfd2bca14 Use proptest for all nalgebra tests. 2021-02-28 17:52:14 +01:00
Crozet Sébastien 660106255c nalgebra-sparse: re-export nalgebra. 2021-02-25 11:14:44 +01:00
Crozet Sébastien c6f7cae326 Move COO, CSC, CSR constructor at the top of the impls. 2021-02-25 11:11:29 +01:00
Crozet Sébastien 98ae4f3818 nalgebra-sparse: reexport CooMatrix, CscMatrix, and CsrMatrix at the root of the crate. 2021-02-25 11:03:47 +01:00
Andreas Longva 66b9185ec1 Test CsrMatrix::row_iter(_mut) and CscMatrix::col_iter(_mut) 2021-02-01 14:38:11 +01:00
Andreas Longva 1ebb612d46 Test Csr/CscMatrix::{index_entry, index_entry_mut, get_entry, get_entry_mut} 2021-02-01 09:27:33 +01:00
Andreas Longva 0936c4fad9 Add tests for Csr/CscMatrix::identity 2021-02-01 08:52:13 +01:00
Andreas Longva 2d11b90149 Address review concerns: doc link, Csr/CScMatrix::pattern docs 2021-02-01 08:41:37 +01:00
Andreas Longva bda8207ffd Rename to_value to into_value (clippy suggestion) 2021-01-26 10:11:24 +01:00
Andreas Longva 7bef417f99 Use nalgebra/proptest-support instead of /proptest in nalgebra-sparse 2021-01-26 10:11:24 +01:00
Andreas Longva e7975ce09a Rebase and update nalgebra version for nalgebra-sparse 2021-01-26 10:11:24 +01:00
Andreas Longva 7473d54d74 rustfmt 2021-01-26 10:11:24 +01:00
Andreas Longva 795d818ae5 Improve documentation of errors and panics 2021-01-26 10:11:24 +01:00
Andreas Longva 5d5ed5be0b Various minor doc and comment fixes 2021-01-26 10:11:24 +01:00
Andreas Longva ccf1f18991 Merge SolveError into OperationError 2021-01-26 10:11:24 +01:00
Andreas Longva 7b6333e9d1 Rename some Csr/Csc/SparsityPattern methods 2021-01-26 10:11:24 +01:00
Andreas Longva cf1bd284f1 Improve ops docs 2021-01-26 10:11:24 +01:00
Andreas Longva f98e64aafd Improve docs for SparsityPattern 2021-01-26 10:11:24 +01:00
Andreas Longva cf220c9d2b Improve docs for CooMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva e8a35ddb62 CSC docs and improved CSR docs 2021-01-26 10:11:24 +01:00
Andreas Longva afcad0ccc8 Documentation for CsrMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva 0bee9be6c7 Extend CSC/CSR * Dense to work for combinations of ref and owned 2021-01-26 10:11:24 +01:00
Andreas Longva 74cd0283eb Partial top-level documentation 2021-01-26 10:11:24 +01:00
Andreas Longva 1fa0de92ae Preserve column dim type in CSR * Dense
This is necessary so that CSR * Vector == Vector (before it would
also yield a DMatrix).
2021-01-26 10:11:24 +01:00
Andreas Longva 15c4382fa9 Docs for most items in nalgebra-sparse 2021-01-26 10:11:24 +01:00
Andreas Longva 7a083d50f7 Increase tolerance to ensure tests pass
It's possible that some particularly bad inputs cause
severe loss of significance in the triangular solves.
This is exacerbated by the fact that the way we test
the (residual) error is also prone to loss of significance,
so that the error measure itself is problematic.

We could maybe improve this in the future by using arbitrary-
precision arithmetic to remove some sources of error and testing
against appropriate bounds.
2021-01-26 10:11:24 +01:00
Andreas Longva 31c911d4fb Change proptest strategies to use DimRange 2021-01-26 10:11:24 +01:00
Andreas Longva 9cd1540496 Improve and test proptest generators
Due to a bug in proptest, we were required to pull in and modify
parts of proptest::strategy::Shuffle. Once the below PR has been merged
and released on crates.io, we can remove this code.

https://github.com/AltSysrq/proptest/pull/217
2021-01-26 10:11:24 +01:00
Andreas Longva 3eab45d81b Replace spmm_pattern with spmm_{csr/csc}_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva cb0f9a5190 Add Csr/CscMatrix::pattern_and_values_mut() 2021-01-26 10:11:24 +01:00
Andreas Longva c43a2b1679 Impl Csr/CscMatrix::into_pattern_and_values 2021-01-26 10:11:24 +01:00
Andreas Longva e655fed4fa Replace Arc<SparsityPattern> with SparsityPattern
After much deliberation, I have come to the conclusion that the
benefits do not really outweigh the added complexity. Even though
the added complexity is relatively minor, it makes it somewhat
more complicated to inter-op with other sparse linear algebra
libraries in the future.
2021-01-26 10:11:24 +01:00
Andreas Longva 9b46a43c7f Add proptest regressions 2021-01-26 10:11:24 +01:00
Andreas Longva fc0c22bf78 Add CscCholesky::solve and ::solve_mut 2021-01-26 10:11:24 +01:00
Andreas Longva d6b4f1ac2f Add CscCholesky::factor_numerical 2021-01-26 10:11:24 +01:00
Andreas Longva cd9c3baead Clean up CscCholesky 2021-01-26 10:11:24 +01:00
Andreas Longva 4b395523dd Fix issue with UninitVec and zero-sized types 2021-01-26 10:11:24 +01:00
Andreas Longva ef3477f411 Remove Zero bound for transpose and impl SparsityPattern::transpose 2021-01-26 10:11:24 +01:00
Andreas Longva 3b1303d1e0 Implement lower/upper triangular solve for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva c988ebb4e7 Fail test compilation if compare feature is missing 2021-01-26 10:11:24 +01:00
Andreas Longva 5869f784e5 Implement CsrMatrix/CscMatrix::filter and associated helpers
Includes ::lower_triangle(), ::upper_triangle() and
::diagonal_matrix().
2021-01-26 10:11:24 +01:00
Andreas Longva 3453577a16 Use matrixcompare 0.2 with prop_assert_matrix_eq in Cholesky test 2021-01-26 10:11:24 +01:00
Andreas Longva 84557d8046 Implement matrixcompare traits for sparse matrices 2021-01-26 10:11:24 +01:00
Andreas Longva aad2216c56 Initial port from nalgebra::CsCholesky factorization to CscCholesky 2021-01-26 10:11:24 +01:00
Andreas Longva 6e34c23d05 Implement Csr/CscMatrix::identity 2021-01-26 10:11:24 +01:00
Andreas Longva ea6c1451b4 Rename Op::unwrap to Op::into_inner 2021-01-26 10:11:24 +01:00
Andreas Longva 885480a634 Implement CSR/CSC * Dense std operations 2021-01-26 10:11:24 +01:00
Andreas Longva b7a7f967b8 Implement Neg, Div, DivAssign for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva 0b4356eb0e Implement Sub for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva 7aeb663165 Implement matrix-scalar multiplication 2021-01-26 10:11:24 +01:00
Andreas Longva dbdf5567fc Implement arithmetic operations for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva 6a1d12705f Remove old .get() API for CscMatrix in favor of entry API
This essentially makes the API of CscMatrix analogous to
that of CsrMatrix.
2021-01-26 10:11:24 +01:00
Andreas Longva e261e7c388 Remove use of unsafe for CsLaneIterMut 2021-01-26 10:11:24 +01:00
Andreas Longva b59c4a3216 Refactor most of Csr/CscMatrix logic into helper type CsMatrix
Still need to update CSC API so that it mirrors CsrMatrix
in terms of get_entry and so on.
2021-01-26 10:11:24 +01:00
Andreas Longva 8983027b39 Minor refactoring for sp* ops 2021-01-26 10:11:24 +01:00
Andreas Longva 66cbd26702 Add prealloc suffix to spmm_csr and spadd_csr
The suffix is intended to communicate that these methods
assume `preallocated` storage, i.e. they try to store the
result in a matrix which already has the correct sparsity
pattern for the operation.
2021-01-26 10:11:24 +01:00