toolchain: add jupytext to poetry and flake

flake.nix

@@ -37,6 +37,10 @@
             old: {
               buildInputs = (old.buildInputs or [ ]) ++ [ super.setuptools ];
             });
+          jupytext = super.jupytext.override {
+            # bypass error: metadata-generation-failed
+            preferWheel = true;
+          };
         });
       };
 

poetry.lock

@@ -1209,6 +1209,35 @@ files = [
     {file = "jupyterlab_widgets-3.0.9.tar.gz", hash = "sha256:6005a4e974c7beee84060fdfba341a3218495046de8ae3ec64888e5fe19fdb4c"},
 ]
 
+[[package]]
+name = "jupytext"
+version = "1.16.1"
+description = "Jupyter notebooks as Markdown documents, Julia, Python or R scripts"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jupytext-1.16.1-py3-none-any.whl", hash = "sha256:796ec4f68ada663569e5d38d4ef03738a01284bfe21c943c485bc36433898bd0"},
+    {file = "jupytext-1.16.1.tar.gz", hash = "sha256:68c7b68685e870e80e60fda8286fbd6269e9c74dc1df4316df6fe46eabc94c99"},
+]
+
+[package.dependencies]
+markdown-it-py = ">=1.0"
+mdit-py-plugins = "*"
+nbformat = "*"
+packaging = "*"
+pyyaml = "*"
+toml = "*"
+
+[package.extras]
+dev = ["jupytext[test-cov,test-external]"]
+docs = ["myst-parser", "sphinx", "sphinx-copybutton", "sphinx-rtd-theme"]
+test = ["pytest", "pytest-randomly", "pytest-xdist"]
+test-cov = ["jupytext[test-integration]", "pytest-cov (>=2.6.1)"]
+test-external = ["autopep8", "black", "flake8", "gitpython", "isort", "jupyter-fs (<0.4.0)", "jupytext[test-integration]", "pre-commit", "sphinx-gallery (<0.8)"]
+test-functional = ["jupytext[test]"]
+test-integration = ["ipykernel", "jupyter-server (!=2.11)", "jupytext[test-functional]", "nbconvert"]
+test-ui = ["calysto-bash"]
+
 [[package]]
 name = "llvmlite"
 version = "0.41.1"
@@ -1242,6 +1271,30 @@ files = [
     {file = "llvmlite-0.41.1.tar.gz", hash = "sha256:f19f767a018e6ec89608e1f6b13348fa2fcde657151137cb64e56d48598a92db"},
 ]
 
+[[package]]
+name = "markdown-it-py"
+version = "3.0.0"
+description = "Python port of markdown-it. Markdown parsing, done right!"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb"},
+    {file = "markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1"},
+]
+
+[package.dependencies]
+mdurl = ">=0.1,<1.0"
+
+[package.extras]
+benchmarking = ["psutil", "pytest", "pytest-benchmark"]
+code-style = ["pre-commit (>=3.0,<4.0)"]
+compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"]
+linkify = ["linkify-it-py (>=1,<3)"]
+plugins = ["mdit-py-plugins"]
+profiling = ["gprof2dot"]
+rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+
 [[package]]
 name = "markupsafe"
 version = "2.1.3"
@@ -1336,6 +1389,36 @@ files = [
     {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"},
 ]
 
+[[package]]
+name = "mdit-py-plugins"
+version = "0.4.0"
+description = "Collection of plugins for markdown-it-py"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "mdit_py_plugins-0.4.0-py3-none-any.whl", hash = "sha256:b51b3bb70691f57f974e257e367107857a93b36f322a9e6d44ca5bf28ec2def9"},
+    {file = "mdit_py_plugins-0.4.0.tar.gz", hash = "sha256:d8ab27e9aed6c38aa716819fedfde15ca275715955f8a185a8e1cf90fb1d2c1b"},
+]
+
+[package.dependencies]
+markdown-it-py = ">=1.0.0,<4.0.0"
+
+[package.extras]
+code-style = ["pre-commit"]
+rtd = ["myst-parser", "sphinx-book-theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+
+[[package]]
+name = "mdurl"
+version = "0.1.2"
+description = "Markdown URL utilities"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
+    {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
+]
+
 [[package]]
 name = "mistune"
 version = "3.0.2"
@@ -2591,6 +2674,17 @@ webencodings = ">=0.4"
 doc = ["sphinx", "sphinx_rtd_theme"]
 test = ["flake8", "isort", "pytest"]
 
+[[package]]
+name = "toml"
+version = "0.10.2"
+description = "Python Library for Tom's Obvious, Minimal Language"
+optional = false
+python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+files = [
+    {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"},
+    {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
+]
+
 [[package]]
 name = "tornado"
 version = "6.4"
@@ -2872,4 +2966,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.11"
-content-hash = "2e8cf0f012eb436a406a3d71375e72462cde7ca7669bb85afc9a074b2bae6a2d"
+content-hash = "5c5b288075581046408471099dc252467fad16a37215d5ad9f1ccb1b5f079821"

pyproject.toml

@@ -17,6 +17,7 @@ pandas = "^2.1.4"
 plotly = "^5.18.0"
 plotly-resampler = "^0.9.1"
 flake8-black = "^0.3.6"
+jupytext = "^1.16.1"
 
 
 [build-system]