//! An implementation of the CSR sparse matrix format. use crate::{SparseFormatError, SparseFormatErrorKind, SparseEntry, SparseEntryMut}; use crate::pattern::{SparsityPattern, SparsityPatternFormatError, SparsityPatternIter}; use crate::csc::CscMatrix; use crate::cs::{CsMatrix, get_entry_from_slices, get_mut_entry_from_slices, CsLaneIterMut, CsLaneIter, CsLane, CsLaneMut}; use nalgebra::Scalar; use num_traits::Zero; use std::sync::Arc; use std::slice::{IterMut, Iter}; /// A CSR representation of a sparse matrix. /// /// The Compressed Sparse Row (CSR) format is well-suited as a general-purpose storage format /// for many sparse matrix applications. /// /// TODO: Storage explanation and examples /// #[derive(Debug, Clone, PartialEq, Eq)] pub struct CsrMatrix { // Rows are major, cols are minor in the sparsity pattern cs: CsMatrix, } impl CsrMatrix { /// Create a zero CSR matrix with no explicitly stored entries. pub fn new(nrows: usize, ncols: usize) -> Self { Self { cs: CsMatrix::new(nrows, ncols) } } /// The number of rows in the matrix. #[inline] pub fn nrows(&self) -> usize { self.cs.pattern().major_dim() } /// The number of columns in the matrix. #[inline] pub fn ncols(&self) -> usize { self.cs.pattern().minor_dim() } /// The number of non-zeros in the matrix. /// /// Note that this corresponds to the number of explicitly stored entries, *not* the actual /// number of algebraically zero entries in the matrix. Explicitly stored entries can still /// be zero. Corresponds to the number of entries in the sparsity pattern. #[inline] pub fn nnz(&self) -> usize { self.cs.pattern().nnz() } /// The row offsets defining part of the CSR format. #[inline] pub fn row_offsets(&self) -> &[usize] { let (offsets, _, _) = self.cs.cs_data(); offsets } /// The column indices defining part of the CSR format. #[inline] pub fn col_indices(&self) -> &[usize] { let (_, indices, _) = self.cs.cs_data(); indices } /// The non-zero values defining part of the CSR format. #[inline] pub fn values(&self) -> &[T] { self.cs.values() } /// Mutable access to the non-zero values. #[inline] pub fn values_mut(&mut self) -> &mut [T] { self.cs.values_mut() } /// Try to construct a CSR matrix from raw CSR data. /// /// It is assumed that each row contains unique and sorted column indices that are in /// bounds with respect to the number of columns in the matrix. If this is not the case, /// an error is returned to indicate the failure. /// /// An error is returned if the data given does not conform to the CSR storage format. /// See the documentation for [CsrMatrix](struct.CsrMatrix.html) for more information. pub fn try_from_csr_data( num_rows: usize, num_cols: usize, row_offsets: Vec, col_indices: Vec, values: Vec, ) -> Result { let pattern = SparsityPattern::try_from_offsets_and_indices( num_rows, num_cols, row_offsets, col_indices) .map_err(pattern_format_error_to_csr_error)?; Self::try_from_pattern_and_values(Arc::new(pattern), values) } /// Try to construct a CSR matrix from a sparsity pattern and associated non-zero values. /// /// Returns an error if the number of values does not match the number of minor indices /// in the pattern. pub fn try_from_pattern_and_values(pattern: Arc, values: Vec) -> Result { if pattern.nnz() == values.len() { Ok(Self { cs: CsMatrix::from_pattern_and_values(pattern, values) }) } else { Err(SparseFormatError::from_kind_and_msg( SparseFormatErrorKind::InvalidStructure, "Number of values and column indices must be the same")) } } /// An iterator over non-zero triplets (i, j, v). /// /// The iteration happens in row-major fashion, meaning that i increases monotonically, /// and j increases monotonically within each row. /// /// Examples /// -------- /// ``` /// # use nalgebra_sparse::csr::CsrMatrix; /// let row_offsets = vec![0, 2, 3, 4]; /// let col_indices = vec![0, 2, 1, 0]; /// let values = vec![1, 2, 3, 4]; /// let mut csr = CsrMatrix::try_from_csr_data(3, 4, row_offsets, col_indices, values) /// .unwrap(); /// /// let triplets: Vec<_> = csr.triplet_iter().map(|(i, j, v)| (i, j, *v)).collect(); /// assert_eq!(triplets, vec![(0, 0, 1), (0, 2, 2), (1, 1, 3), (2, 0, 4)]); /// ``` pub fn triplet_iter(&self) -> CsrTripletIter { CsrTripletIter { pattern_iter: self.pattern().entries(), values_iter: self.values().iter() } } /// A mutable iterator over non-zero triplets (i, j, v). /// /// Iteration happens in the same order as for [triplet_iter](#method.triplet_iter). /// /// Examples /// -------- /// ``` /// # use nalgebra_sparse::csr::CsrMatrix; /// # let row_offsets = vec![0, 2, 3, 4]; /// # let col_indices = vec![0, 2, 1, 0]; /// # let values = vec![1, 2, 3, 4]; /// // Using the same data as in the `triplet_iter` example /// let mut csr = CsrMatrix::try_from_csr_data(3, 4, row_offsets, col_indices, values) /// .unwrap(); /// /// // Zero out lower-triangular terms /// csr.triplet_iter_mut() /// .filter(|(i, j, _)| j < i) /// .for_each(|(_, _, v)| *v = 0); /// /// let triplets: Vec<_> = csr.triplet_iter().map(|(i, j, v)| (i, j, *v)).collect(); /// assert_eq!(triplets, vec![(0, 0, 1), (0, 2, 2), (1, 1, 3), (2, 0, 0)]); /// ``` pub fn triplet_iter_mut(&mut self) -> CsrTripletIterMut { let (pattern, values) = self.cs.pattern_and_values_mut(); CsrTripletIterMut { pattern_iter: pattern.entries(), values_mut_iter: values.iter_mut() } } /// Return the row at the given row index. /// /// Panics /// ------ /// Panics if row index is out of bounds. #[inline] pub fn row(&self, index: usize) -> CsrRow { self.get_row(index) .expect("Row index must be in bounds") } /// Mutable row access for the given row index. /// /// Panics /// ------ /// Panics if row index is out of bounds. #[inline] pub fn row_mut(&mut self, index: usize) -> CsrRowMut { self.get_row_mut(index) .expect("Row index must be in bounds") } /// Return the row at the given row index, or `None` if out of bounds. #[inline] pub fn get_row(&self, index: usize) -> Option> { self.cs .get_lane(index) .map(|lane| CsrRow { lane }) } /// Mutable row access for the given row index, or `None` if out of bounds. #[inline] pub fn get_row_mut(&mut self, index: usize) -> Option> { self.cs .get_lane_mut(index) .map(|lane| CsrRowMut { lane }) } /// An iterator over rows in the matrix. pub fn row_iter(&self) -> CsrRowIter { CsrRowIter { lane_iter: CsLaneIter::new(self.pattern().as_ref(), self.values()) } } /// A mutable iterator over rows in the matrix. pub fn row_iter_mut(&mut self) -> CsrRowIterMut { let (pattern, values) = self.cs.pattern_and_values_mut(); CsrRowIterMut { lane_iter: CsLaneIterMut::new(pattern, values), } } /// Disassembles the CSR matrix into its underlying offset, index and value arrays. /// /// If the matrix contains the sole reference to the sparsity pattern, /// then the data is returned as-is. Otherwise, the sparsity pattern is cloned. /// /// Examples /// -------- /// /// ``` /// # use nalgebra_sparse::csr::CsrMatrix; /// let row_offsets = vec![0, 2, 3, 4]; /// let col_indices = vec![0, 2, 1, 0]; /// let values = vec![1, 2, 3, 4]; /// let mut csr = CsrMatrix::try_from_csr_data( /// 3, /// 4, /// row_offsets.clone(), /// col_indices.clone(), /// values.clone()) /// .unwrap(); /// let (row_offsets2, col_indices2, values2) = csr.disassemble(); /// assert_eq!(row_offsets2, row_offsets); /// assert_eq!(col_indices2, col_indices); /// assert_eq!(values2, values); /// ``` pub fn disassemble(self) -> (Vec, Vec, Vec) { self.cs.disassemble() } /// Returns the underlying sparsity pattern. /// /// The sparsity pattern is stored internally inside an `Arc`. This allows users to re-use /// the same sparsity pattern for multiple matrices without storing the same pattern multiple /// times in memory. pub fn pattern(&self) -> &Arc { self.cs.pattern() } /// Reinterprets the CSR matrix as its transpose represented by a CSC matrix. /// /// This operation does not touch the CSR data, and is effectively a no-op. pub fn transpose_as_csc(self) -> CscMatrix { let (pattern, values) = self.cs.take_pattern_and_values(); CscMatrix::try_from_pattern_and_values(pattern, values).unwrap() } /// Returns an entry for the given row/col indices, or `None` if the indices are out of bounds. /// /// Each call to this function incurs the cost of a binary search among the explicitly /// stored column entries for the given row. pub fn get_entry(&self, row_index: usize, col_index: usize) -> Option> { self.cs.get_entry(row_index, col_index) } /// Returns a mutable entry for the given row/col indices, or `None` if the indices are out /// of bounds. /// /// Each call to this function incurs the cost of a binary search among the explicitly /// stored column entries for the given row. pub fn get_entry_mut(&mut self, row_index: usize, col_index: usize) -> Option> { self.cs.get_entry_mut(row_index, col_index) } /// Returns an entry for the given row/col indices. /// /// Same as `get_entry`, except that it directly panics upon encountering row/col indices /// out of bounds. /// /// Panics /// ------ /// Panics if `row_index` or `col_index` is out of bounds. pub fn index_entry(&self, row_index: usize, col_index: usize) -> SparseEntry { self.get_entry(row_index, col_index) .expect("Out of bounds matrix indices encountered") } /// Returns a mutable entry for the given row/col indices. /// /// Same as `get_entry_mut`, except that it directly panics upon encountering row/col indices /// out of bounds. /// /// Panics /// ------ /// Panics if `row_index` or `col_index` is out of bounds. pub fn index_entry_mut(&mut self, row_index: usize, col_index: usize) -> SparseEntryMut { self.get_entry_mut(row_index, col_index) .expect("Out of bounds matrix indices encountered") } /// Returns a triplet of slices `(row_offsets, col_indices, values)` that make up the CSR data. pub fn csr_data(&self) -> (&[usize], &[usize], &[T]) { self.cs.cs_data() } /// Returns a triplet of slices `(row_offsets, col_indices, values)` that make up the CSR data, /// where the `values` array is mutable. pub fn csr_data_mut(&mut self) -> (&[usize], &[usize], &mut [T]) { self.cs.cs_data_mut() } } impl CsrMatrix where T: Scalar + Zero { /// Compute the transpose of the matrix. pub fn transpose(&self) -> CsrMatrix { CscMatrix::from(self).transpose_as_csr() } } /// Convert pattern format errors into more meaningful CSR-specific errors. /// /// This ensures that the terminology is consistent: we are talking about rows and columns, /// not lanes, major and minor dimensions. fn pattern_format_error_to_csr_error(err: SparsityPatternFormatError) -> SparseFormatError { use SparsityPatternFormatError::*; use SparsityPatternFormatError::DuplicateEntry as PatternDuplicateEntry; use SparseFormatError as E; use SparseFormatErrorKind as K; match err { InvalidOffsetArrayLength => E::from_kind_and_msg( K::InvalidStructure, "Length of row offset array is not equal to nrows + 1."), InvalidOffsetFirstLast => E::from_kind_and_msg( K::InvalidStructure, "First or last row offset is inconsistent with format specification."), NonmonotonicOffsets => E::from_kind_and_msg( K::InvalidStructure, "Row offsets are not monotonically increasing."), NonmonotonicMinorIndices => E::from_kind_and_msg( K::InvalidStructure, "Column indices are not monotonically increasing (sorted) within each row."), MinorIndexOutOfBounds => E::from_kind_and_msg( K::IndexOutOfBounds, "Column indices are out of bounds."), PatternDuplicateEntry => E::from_kind_and_msg( K::DuplicateEntry, "Matrix data contains duplicate entries."), } } /// Iterator type for iterating over triplets in a CSR matrix. #[derive(Debug)] pub struct CsrTripletIter<'a, T> { pattern_iter: SparsityPatternIter<'a>, values_iter: Iter<'a, T> } impl<'a, T> Iterator for CsrTripletIter<'a, T> { type Item = (usize, usize, &'a T); fn next(&mut self) -> Option { let next_entry = self.pattern_iter.next(); let next_value = self.values_iter.next(); match (next_entry, next_value) { (Some((i, j)), Some(v)) => Some((i, j, v)), _ => None } } } /// Iterator type for mutably iterating over triplets in a CSR matrix. #[derive(Debug)] pub struct CsrTripletIterMut<'a, T> { pattern_iter: SparsityPatternIter<'a>, values_mut_iter: IterMut<'a, T> } impl<'a, T> Iterator for CsrTripletIterMut<'a, T> { type Item = (usize, usize, &'a mut T); #[inline] fn next(&mut self) -> Option { let next_entry = self.pattern_iter.next(); let next_value = self.values_mut_iter.next(); match (next_entry, next_value) { (Some((i, j)), Some(v)) => Some((i, j, v)), _ => None } } } /// An immutable representation of a row in a CSR matrix. #[derive(Debug, Clone, PartialEq, Eq)] pub struct CsrRow<'a, T> { lane: CsLane<'a, T> } /// A mutable representation of a row in a CSR matrix. /// /// Note that only explicitly stored entries can be mutated. The sparsity pattern belonging /// to the row cannot be modified. #[derive(Debug, PartialEq, Eq)] pub struct CsrRowMut<'a, T> { lane: CsLaneMut<'a, T> } /// Implement the methods common to both CsrRow and CsrRowMut macro_rules! impl_csr_row_common_methods { ($name:ty) => { impl<'a, T> $name { /// The number of global columns in the row. #[inline] pub fn ncols(&self) -> usize { self.lane.minor_dim } /// The number of non-zeros in this row. #[inline] pub fn nnz(&self) -> usize { self.lane.minor_indices.len() } /// The column indices corresponding to explicitly stored entries in this row. #[inline] pub fn col_indices(&self) -> &[usize] { self.lane.minor_indices } /// The values corresponding to explicitly stored entries in this row. #[inline] pub fn values(&self) -> &[T] { self.lane.values } /// Returns an entry for the given global column index. /// /// Each call to this function incurs the cost of a binary search among the explicitly /// stored column entries. pub fn get_entry(&self, global_col_index: usize) -> Option> { get_entry_from_slices( self.lane.minor_dim, self.lane.minor_indices, self.lane.values, global_col_index) } } } } impl_csr_row_common_methods!(CsrRow<'a, T>); impl_csr_row_common_methods!(CsrRowMut<'a, T>); impl<'a, T> CsrRowMut<'a, T> { /// Mutable access to the values corresponding to explicitly stored entries in this row. pub fn values_mut(&mut self) -> &mut [T] { self.lane.values } /// Provides simultaneous access to column indices and mutable values corresponding to the /// explicitly stored entries in this row. /// /// This method primarily facilitates low-level access for methods that process data stored /// in CSR format directly. pub fn cols_and_values_mut(&mut self) -> (&[usize], &mut [T]) { (self.lane.minor_indices, self.lane.values) } /// Returns a mutable entry for the given global column index. pub fn get_entry_mut(&mut self, global_col_index: usize) -> Option> { get_mut_entry_from_slices(self.lane.minor_dim, self.lane.minor_indices, self.lane.values, global_col_index) } } /// Row iterator for [CsrMatrix](struct.CsrMatrix.html). pub struct CsrRowIter<'a, T> { lane_iter: CsLaneIter<'a, T> } impl<'a, T> Iterator for CsrRowIter<'a, T> { type Item = CsrRow<'a, T>; fn next(&mut self) -> Option { self.lane_iter .next() .map(|lane| CsrRow { lane }) } } /// Mutable row iterator for [CsrMatrix](struct.CsrMatrix.html). pub struct CsrRowIterMut<'a, T> { lane_iter: CsLaneIterMut<'a, T> } impl<'a, T> Iterator for CsrRowIterMut<'a, T> where T: 'a { type Item = CsrRowMut<'a, T>; fn next(&mut self) -> Option { self.lane_iter .next() .map(|lane| CsrRowMut { lane }) } }