Commit Graph

183 Commits

Author SHA1 Message Date
Andreas Longva 9b32195558 Change write -> save in order to be consistent with load terminology 2022-05-09 09:51:55 +02:00
Andreas Longva ef9a3dd767 Update module-level docs 2022-05-09 09:23:42 +02:00
Hantao Hui 8424232dfb merge updates from dev branch 2022-05-07 13:46:52 +02:00
Hantao Hui 31fc498182 use tempdir to write matrix when running test 2022-05-07 13:40:25 +02:00
Andreas Borgen Longva 3981857f2b
Merge branch 'dev' into matrixmarket-io 2022-04-22 08:57:06 +02:00
Hantao Hui 8e48d26767 add more tests; use bufwritter; fix typo; use temp_dir to test with files 2022-03-21 12:19:34 +01:00
Anton Arsenij 757b99e843
CSC: Create constructor for unsorted but otherwise valid data (#1015)
* CSC: Create constructor for unsorted but otherwise valid data

* Test creating csc matrix from unsorted but valid data

* Add function for validation and sorting

* Move validation function to cs.rs

* Restore pattern unit test

* Add unit test for 'major offset out of bounds' case

* Avoid permutation allocations on 'happy path'

* Reuse allocated permutation

* Fix comments for test-data examples

* Remove unnecessary iter variable

* Set up buffers for sorting up front

* Use common apply_permutation function

* Use common compute_sort_permutation function

* Move unsafe down to unchecked call

* Add panic cases to documentation

* Remove unnecessary Zero bound

* Move buffer set up away from loop

* Lift T::Zero from cs.rs

* Improve checking if values are provided

* Simplify copying from slices & add test for wrong values length

* Check duplicates after sorting

* Fix formatting

* Check values length at the beginning

* Check length of values if values != None
2022-03-03 10:14:16 +01:00
Hantao Hui 0cae584262 use writeln! macro; replace unsafe with expect 2022-02-25 18:10:34 +01:00
Hantao Hui 9e0dfd14de use std::io::Write trait when export to matrix market 2022-02-13 21:16:16 +01:00
Hantao Hui 8904c01c7b export to file directly; add a new trait for export 2022-02-03 11:49:15 +01:00
Hantao Hui d511e372de add support for matrix market export 2022-01-24 23:17:30 +01:00
Fabian Loeschner 99eb8c1589 Revert "Rename nrows/ncols args for try_from_*_data functions for consistency"
This reverts commit 2a3e657b56.
2022-01-13 10:28:00 +01:00
Fabian Loeschner 89f1e855bb Revert "Fix panic in SparsityPattern::try_from_* if major index is out of bounds"
This reverts commit 12afe2917af4c30fc4a17316e453d0830072642c to avoid conflict with #1015.
2022-01-11 10:35:07 +01:00
Fabian Loeschner 38989ed5f0 Move sparse matrix serialization to separate files 2022-01-11 10:35:07 +01:00
Fabian Löschner 583fde05fe Add comment explaining intermediate types for serialization 2022-01-11 10:35:07 +01:00
Fabian Löschner fe70a80e41 Partial revert "Use custom serde errors, make all sparse errs lowercase" 2022-01-11 10:35:07 +01:00
Fabian Loeschner 513178e03e Revert "Updated more error messages"
This reverts commit a42eae45e045c391ede37a7a4328c09cbbb87a0f.
2022-01-11 10:35:07 +01:00
Fabian Löschner 647455dadd Move serialization code to submodules 2022-01-11 10:35:07 +01:00
Fabian Löschner 837ded932e Replace usage of Cow with generic type 2022-01-11 10:35:07 +01:00
Fabian Löschner 9b87fa4ffa Add cfg attribute to Cow imports 2022-01-11 10:35:07 +01:00
Fabian Löschner a8fa7f71c0 Unify separate (de)serialization helper structs by using Cow<'a, [T]> 2022-01-11 10:35:07 +01:00
Fabian Loeschner 3be81be2e3 Updated more error messages 2022-01-11 10:35:07 +01:00
Fabian Loeschner 7e67d920a7 Use custom serde errors, make all sparse errs lowercase w/o punctuation 2022-01-11 10:35:07 +01:00
Fabian Loeschner e9b7718292 Fix panic in SparsityPattern::try_from_* if major index is out of bounds 2022-01-11 10:35:07 +01:00
Fabian Loeschner e2c33b48ac Simplify Deserialize bound 2022-01-11 10:35:07 +01:00
Fabian Loeschner bfaf29393c Implement Serialize, Deserialize for SparsityPattern 2022-01-11 10:35:07 +01:00
Fabian Loeschner 2a3e657b56 Rename nrows/ncols args for try_from_*_data functions for consistency 2022-01-11 10:35:07 +01:00
Fabian Loeschner 40d8a904a3 Implement Serialize, Deserialize for Csc, Coo; move helper out of impls 2022-01-11 10:35:07 +01:00
Fabian Loeschner 18b694dad2 Move serialization helper structs into trait impls 2022-01-11 10:35:07 +01:00
Fabian Löschner f9aca24b15 Implement Serialize and Deserialize for CsrMatrix 2022-01-11 10:35:07 +01:00
Sébastien Crozet e8b9c40123 Release v0.30.0 2022-01-02 15:30:15 +01:00
Sébastien Crozet 1576a1517a
Merge pull request #1017 from losanc/matrixmarket-io
added reading matrix market data to sparse coomatrix
2021-12-21 01:51:08 -08:00
Hantao Hui 96b65c430f using no_run in doc code example 2021-12-17 14:48:14 +01:00
Hantao Hui 656180f40e fix for empty dense matrix 2021-12-13 09:28:28 +01:00
Hantao Hui 92b324c007 code fmt; fix failing unit test and doc test 2021-12-12 12:10:20 +01:00
Andreas Longva 6e10efe862 Remove redundant proptest patch 2021-12-01 12:44:07 +01:00
Andreas Longva e2820316a8 Fix typos 2021-12-01 12:17:47 +01:00
Andreas Longva 4569484aa0 Line breaks 2021-12-01 12:08:42 +01:00
Andreas Longva e3d1119bff Hide MatrixMarketScalar implementation details for now
The existing MatrixMarketScalar is relatively closely tied to the way
oru parser is implemented. I've moved these internals into an internal
trait and sealed the public trait.

This makes it less flexible for users for now, but gives us more freedom
to change internals in the future.
2021-12-01 11:45:11 +01:00
Andreas Longva 93f3d60005 Remove From<pest::Error> for MatrixMarketError
We want pest to remain an internal implementation detail, so it should
not leak into the public API.
2021-12-01 11:33:08 +01:00
Andreas Longva 4d0f401882 Add (failing) test for empty matrix market matrix 2021-12-01 11:27:03 +01:00
Andreas Longva 4c039573f2 Make nalgebra-sparse unit tests require io feature 2021-12-01 11:26:51 +01:00
Andreas Longva 1b73b2f991 Link to matrix market IO in lib.rs 2021-12-01 11:07:47 +01:00
Andreas Longva 3b67afcd9b Matrix market: Extend and reword documentation, rename some types 2021-12-01 11:07:13 +01:00
Hantao Hui 1cc5c7eba6 fix doc typo 2021-11-23 16:17:06 +01:00
Hantao Hui 920bd75b82 fix typo 2021-11-18 11:42:47 +01:00
Hantao Hui 332fe8c0e4 update loading matrix market, including:
1. Several renamings
2. removed unnecessary traits
3. added support for dense matrix
4. removed unnecessary comparison when reading data line by line. (e.g.
   only read header line once)
2021-11-17 16:41:10 +01:00
Hantao Hui 7f9128c92d added reading matrix market data to sparse coomatrix 2021-11-02 10:59:59 +01:00
Anton 89416baace Bring apply permutation function back to serial.rs 2021-10-20 20:28:38 +02:00
Anton 752d1f300d Permute values without unnecessary allocation 2021-10-20 01:50:42 +02:00