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31fc498182
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68 Commits

Author SHA1 Message Date
Hantao Hui
31fc498182 use tempdir to write matrix when running test 2022-05-07 13:40:25 +02:00
Hantao Hui
8e48d26767 add more tests; use bufwritter; fix typo; use temp_dir to test with files 2022-03-21 12:19:34 +01:00
Hantao Hui
d511e372de add support for matrix market export 2022-01-24 23:17:30 +01:00
Hantao Hui
656180f40e fix for empty dense matrix 2021-12-13 09:28:28 +01:00
Hantao Hui
92b324c007 code fmt; fix failing unit test and doc test 2021-12-12 12:10:20 +01:00
Andreas Longva
4d0f401882 Add (failing) test for empty matrix market matrix 2021-12-01 11:27:03 +01:00
Andreas Longva
4c039573f2 Make nalgebra-sparse unit tests require io feature 2021-12-01 11:26:51 +01:00
Hantao Hui
332fe8c0e4 update loading matrix market, including: 
1. Several renamings
2. removed unnecessary traits
3. added support for dense matrix
4. removed unnecessary comparison when reading data line by line. (e.g.
   only read header line once)
 2021-11-17 16:41:10 +01:00
Hantao Hui
7f9128c92d added reading matrix market data to sparse coomatrix 2021-11-02 10:59:59 +01:00
Anton
752d1f300d Permute values without unnecessary allocation 2021-10-20 01:50:42 +02:00
Anton
f90bb8d64a Fix wrong csr-constructor call 2021-10-18 10:59:51 +02:00
Anton
86eeb192db Add module for unit test data examples 2021-10-17 22:29:59 +02:00
Anton
4b41be75b0 Add tests for some csr matrix related failure cases 2021-10-14 23:18:34 +02:00
Anton
469765a4e5 Apply permutation 2021-10-08 00:36:40 +02:00
Anton
9e85c9e2b6 CSR/CSC: Provide constructor for unsorted but otherwise valid data 2021-10-03 14:59:28 +02:00
Paul Jakob Schroeder
e6e7efba8a COO: add push_matrix fn 
- This function allows one to add entire dense matrices
to a sparse COO matrix.
- Added a small mention of this new function in the
example in lib.rs
 2021-06-08 10:05:50 -04:00
Andreas Longva
66b9185ec1 Test CsrMatrix::row_iter(_mut) and CscMatrix::col_iter(_mut) 2021-02-01 14:38:11 +01:00
Andreas Longva
1ebb612d46 Test Csr/CscMatrix::{index_entry, index_entry_mut, get_entry, get_entry_mut} 2021-02-01 09:27:33 +01:00
Andreas Longva
0936c4fad9 Add tests for Csr/CscMatrix::identity 2021-02-01 08:52:13 +01:00
Andreas Longva
7473d54d74 rustfmt 2021-01-26 10:11:24 +01:00
Andreas Longva
7b6333e9d1 Rename some Csr/Csc/SparsityPattern methods 2021-01-26 10:11:24 +01:00
Andreas Longva
0bee9be6c7 Extend CSC/CSR * Dense to work for combinations of ref and owned 2021-01-26 10:11:24 +01:00
Andreas Longva
7a083d50f7 Increase tolerance to ensure tests pass 
It's possible that some particularly bad inputs cause
severe loss of significance in the triangular solves.
This is exacerbated by the fact that the way we test
the (residual) error is also prone to loss of significance,
so that the error measure itself is problematic.

We could maybe improve this in the future by using arbitrary-
precision arithmetic to remove some sources of error and testing
against appropriate bounds.
 2021-01-26 10:11:24 +01:00
Andreas Longva
31c911d4fb Change proptest strategies to use DimRange 2021-01-26 10:11:24 +01:00
Andreas Longva
9cd1540496 Improve and test proptest generators 
Due to a bug in proptest, we were required to pull in and modify
parts of proptest::strategy::Shuffle. Once the below PR has been merged
and released on crates.io, we can remove this code.

https://github.com/AltSysrq/proptest/pull/217
 2021-01-26 10:11:24 +01:00
Andreas Longva
3eab45d81b Replace spmm_pattern with spmm_{csr/csc}_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva
e655fed4fa Replace Arc<SparsityPattern> with SparsityPattern 
After much deliberation, I have come to the conclusion that the
benefits do not really outweigh the added complexity. Even though
the added complexity is relatively minor, it makes it somewhat
more complicated to inter-op with other sparse linear algebra
libraries in the future.
 2021-01-26 10:11:24 +01:00
Andreas Longva
9b46a43c7f Add proptest regressions 2021-01-26 10:11:24 +01:00
Andreas Longva
fc0c22bf78 Add CscCholesky::solve and ::solve_mut 2021-01-26 10:11:24 +01:00
Andreas Longva
3b1303d1e0 Implement lower/upper triangular solve for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva
5869f784e5 Implement CsrMatrix/CscMatrix::filter and associated helpers 
Includes ::lower_triangle(), ::upper_triangle() and
::diagonal_matrix().
 2021-01-26 10:11:24 +01:00
Andreas Longva
3453577a16 Use matrixcompare 0.2 with prop_assert_matrix_eq in Cholesky test 2021-01-26 10:11:24 +01:00
Andreas Longva
aad2216c56 Initial port from nalgebra::CsCholesky factorization to CscCholesky 2021-01-26 10:11:24 +01:00
Andreas Longva
885480a634 Implement CSR/CSC * Dense std operations 2021-01-26 10:11:24 +01:00
Andreas Longva
b7a7f967b8 Implement Neg, Div, DivAssign for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva
0b4356eb0e Implement Sub for Csr/CscMatrix 2021-01-26 10:11:24 +01:00
Andreas Longva
7aeb663165 Implement matrix-scalar multiplication 2021-01-26 10:11:24 +01:00
Andreas Longva
dbdf5567fc Implement arithmetic operations for CSC matrices 2021-01-26 10:11:24 +01:00
Andreas Longva
66cbd26702 Add prealloc suffix to spmm_csr and spadd_csr 
The suffix is intended to communicate that these methods
assume `preallocated` storage, i.e. they try to store the
result in a matrix which already has the correct sparsity
pattern for the operation.
 2021-01-26 10:11:24 +01:00
Andreas Longva
4af3fcbdd3 Reorder parameters in ops to intuitive order 2021-01-26 10:11:24 +01:00
Andreas Longva
fe8592fde1 Refactor ops to use new Op type instead of separate Transpose flag 2021-01-26 10:11:24 +01:00
Andreas Longva
c6a8fcdee2 Simplify spadd_pattern API and name 2021-01-26 10:11:24 +01:00
Andreas Longva
6a100c085a Add proptest regressions 2021-01-26 10:11:24 +01:00
Andreas Longva
b25848838b Implement CSR-CSR matrix multiplication 2021-01-26 10:11:24 +01:00
Andreas Longva
d9cfe5cb3e Improve dimension assertions for spadd_csr 2021-01-26 10:11:24 +01:00
Andreas Longva
2d534a6133 Implement spmm_csr 2021-01-26 10:11:24 +01:00
Andreas Longva
9db17f00e7 Implement spmm_pattern 2021-01-26 10:11:24 +01:00
Andreas Longva
c4285d9fb3 remove spmv_coo 2021-01-26 10:11:24 +01:00
Andreas Longva
41941e62c8 Implement CSR-CSR addition 2021-01-26 10:11:24 +01:00
Andreas Longva
830df6d07b Implement Csr/CscMatrix::transpose() 2021-01-26 10:11:24 +01:00