nalgebra/nalgebra-sparse/src/cs.rs

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use crate::pattern::SparsityPattern;
use crate::{SparseEntry, SparseEntryMut};
use std::sync::Arc;
use std::ops::Range;
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use std::mem::replace;
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use num_traits::One;
use nalgebra::Scalar;
/// An abstract compressed matrix.
///
/// For the time being, this is only used internally to share implementation between
/// CSR and CSC matrices.
///
/// A CSR matrix is obtained by associating rows with the major dimension, while a CSC matrix
/// is obtained by associating columns with the major dimension.
#[derive(Debug, Clone, PartialEq, Eq)]
pub struct CsMatrix<T> {
sparsity_pattern: Arc<SparsityPattern>,
values: Vec<T>
}
impl<T> CsMatrix<T> {
/// Create a zero matrix with no explicitly stored entries.
#[inline]
pub fn new(major_dim: usize, minor_dim: usize) -> Self {
Self {
sparsity_pattern: Arc::new(SparsityPattern::new(major_dim, minor_dim)),
values: vec![],
}
}
#[inline]
pub fn pattern(&self) -> &Arc<SparsityPattern> {
&self.sparsity_pattern
}
#[inline]
pub fn values(&self) -> &[T] {
&self.values
}
#[inline]
pub fn values_mut(&mut self) -> &mut [T] {
&mut self.values
}
/// Returns the raw data represented as a tuple `(major_offsets, minor_indices, values)`.
#[inline]
pub fn cs_data(&self) -> (&[usize], &[usize], &[T]) {
let pattern = self.pattern().as_ref();
(pattern.major_offsets(), pattern.minor_indices(), &self.values)
}
/// Returns the raw data represented as a tuple `(major_offsets, minor_indices, values)`.
#[inline]
pub fn cs_data_mut(&mut self) -> (&[usize], &[usize], &mut [T]) {
let pattern = self.sparsity_pattern.as_ref();
(pattern.major_offsets(), pattern.minor_indices(), &mut self.values)
}
#[inline]
pub fn pattern_and_values_mut(&mut self) -> (&Arc<SparsityPattern>, &mut [T]) {
(&self.sparsity_pattern, &mut self.values)
}
#[inline]
pub fn from_pattern_and_values(pattern: Arc<SparsityPattern>, values: Vec<T>)
-> Self {
assert_eq!(pattern.nnz(), values.len(), "Internal error: consumers should verify shape compatibility.");
Self {
sparsity_pattern: pattern,
values,
}
}
/// Internal method for simplifying access to a lane's data
#[inline]
pub fn get_index_range(&self, row_index: usize) -> Option<Range<usize>> {
let row_begin = *self.sparsity_pattern.major_offsets().get(row_index)?;
let row_end = *self.sparsity_pattern.major_offsets().get(row_index + 1)?;
Some(row_begin .. row_end)
}
pub fn take_pattern_and_values(self) -> (Arc<SparsityPattern>, Vec<T>) {
(self.sparsity_pattern, self.values)
}
#[inline]
pub fn disassemble(self) -> (Vec<usize>, Vec<usize>, Vec<T>) {
// Take an Arc to the pattern, which might be the sole reference to the data after
// taking the values. This is important, because it might let us avoid cloning the data
// further below.
let pattern = self.sparsity_pattern;
let values = self.values;
// Try to take the pattern out of the `Arc` if possible,
// otherwise clone the pattern.
let owned_pattern = Arc::try_unwrap(pattern)
.unwrap_or_else(|arc| SparsityPattern::clone(&*arc));
let (offsets, indices) = owned_pattern.disassemble();
(offsets, indices, values)
}
/// Returns an entry for the given major/minor indices, or `None` if the indices are out
/// of bounds.
pub fn get_entry(&self, major_index: usize, minor_index: usize) -> Option<SparseEntry<T>> {
let row_range = self.get_index_range(major_index)?;
let (_, minor_indices, values) = self.cs_data();
let minor_indices = &minor_indices[row_range.clone()];
let values = &values[row_range];
get_entry_from_slices(self.pattern().minor_dim(), minor_indices, values, minor_index)
}
/// Returns a mutable entry for the given major/minor indices, or `None` if the indices are out
/// of bounds.
pub fn get_entry_mut(&mut self, major_index: usize, minor_index: usize)
-> Option<SparseEntryMut<T>> {
let row_range = self.get_index_range(major_index)?;
let minor_dim = self.pattern().minor_dim();
let (_, minor_indices, values) = self.cs_data_mut();
let minor_indices = &minor_indices[row_range.clone()];
let values = &mut values[row_range];
get_mut_entry_from_slices(minor_dim, minor_indices, values, minor_index)
}
pub fn get_lane(&self, index: usize) -> Option<CsLane<T>> {
let range = self.get_index_range(index)?;
let (_, minor_indices, values) = self.cs_data();
Some(CsLane {
minor_indices: &minor_indices[range.clone()],
values: &values[range],
minor_dim: self.pattern().minor_dim()
})
}
#[inline]
pub fn get_lane_mut(&mut self, index: usize) -> Option<CsLaneMut<T>> {
let range = self.get_index_range(index)?;
let minor_dim = self.pattern().minor_dim();
let (_, minor_indices, values) = self.cs_data_mut();
Some(CsLaneMut {
minor_dim,
minor_indices: &minor_indices[range.clone()],
values: &mut values[range]
})
}
#[inline]
pub fn lane_iter(&self) -> CsLaneIter<T> {
CsLaneIter::new(self.pattern().as_ref(), self.values())
}
#[inline]
pub fn lane_iter_mut(&mut self) -> CsLaneIterMut<T> {
CsLaneIterMut::new(self.sparsity_pattern.as_ref(), &mut self.values)
}
#[inline]
pub fn filter<P>(&self, predicate: P) -> Self
where
T: Clone,
P: Fn(usize, usize, &T) -> bool
{
let (major_dim, minor_dim) = (self.pattern().major_dim(), self.pattern().minor_dim());
let mut new_offsets = Vec::with_capacity(self.pattern().major_dim() + 1);
let mut new_indices = Vec::new();
let mut new_values = Vec::new();
new_offsets.push(0);
for (i, lane) in self.lane_iter().enumerate() {
for (&j, value) in lane.minor_indices().iter().zip(lane.values) {
if predicate(i, j, value) {
new_indices.push(j);
new_values.push(value.clone());
}
}
new_offsets.push(new_indices.len());
}
// TODO: Avoid checks here
let new_pattern = SparsityPattern::try_from_offsets_and_indices(
major_dim,
minor_dim,
new_offsets,
new_indices)
.expect("Internal error: Sparsity pattern must always be valid.");
Self::from_pattern_and_values(Arc::new(new_pattern), new_values)
}
}
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impl<T: Scalar + One> CsMatrix<T> {
/// TODO
#[inline]
pub fn identity(n: usize) -> Self {
let offsets: Vec<_> = (0 ..= n).collect();
let indices: Vec<_> = (0 .. n).collect();
let values = vec![T::one(); n];
// TODO: We should skip checks here
let pattern = SparsityPattern::try_from_offsets_and_indices(n, n, offsets, indices)
.unwrap();
Self::from_pattern_and_values(Arc::new(pattern), values)
}
}
fn get_entry_from_slices<'a, T>(
minor_dim: usize,
minor_indices: &'a [usize],
values: &'a [T],
global_minor_index: usize) -> Option<SparseEntry<'a, T>> {
let local_index = minor_indices.binary_search(&global_minor_index);
if let Ok(local_index) = local_index {
Some(SparseEntry::NonZero(&values[local_index]))
} else if global_minor_index < minor_dim {
Some(SparseEntry::Zero)
} else {
None
}
}
fn get_mut_entry_from_slices<'a, T>(
minor_dim: usize,
minor_indices: &'a [usize],
values: &'a mut [T],
global_minor_indices: usize) -> Option<SparseEntryMut<'a, T>> {
let local_index = minor_indices.binary_search(&global_minor_indices);
if let Ok(local_index) = local_index {
Some(SparseEntryMut::NonZero(&mut values[local_index]))
} else if global_minor_indices < minor_dim {
Some(SparseEntryMut::Zero)
} else {
None
}
}
#[derive(Debug, Clone, PartialEq, Eq)]
pub struct CsLane<'a, T> {
minor_dim: usize,
minor_indices: &'a [usize],
values: &'a [T]
}
#[derive(Debug, PartialEq, Eq)]
pub struct CsLaneMut<'a, T> {
minor_dim: usize,
minor_indices: &'a [usize],
values: &'a mut [T]
}
pub struct CsLaneIter<'a, T> {
// The index of the lane that will be returned on the next iteration
current_lane_idx: usize,
pattern: &'a SparsityPattern,
remaining_values: &'a [T],
}
impl<'a, T> CsLaneIter<'a, T> {
pub fn new(pattern: &'a SparsityPattern, values: &'a [T]) -> Self {
Self {
current_lane_idx: 0,
pattern,
remaining_values: values
}
}
}
impl<'a, T> Iterator for CsLaneIter<'a, T>
where
T: 'a
{
type Item = CsLane<'a, T>;
fn next(&mut self) -> Option<Self::Item> {
let lane = self.pattern.get_lane(self.current_lane_idx);
let minor_dim = self.pattern.minor_dim();
if let Some(minor_indices) = lane {
let count = minor_indices.len();
let values_in_lane = &self.remaining_values[..count];
self.remaining_values = &self.remaining_values[count ..];
self.current_lane_idx += 1;
Some(CsLane {
minor_dim,
minor_indices,
values: values_in_lane
})
} else {
None
}
}
}
pub struct CsLaneIterMut<'a, T> {
// The index of the lane that will be returned on the next iteration
current_lane_idx: usize,
pattern: &'a SparsityPattern,
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remaining_values: &'a mut [T],
}
impl<'a, T> CsLaneIterMut<'a, T> {
pub fn new(pattern: &'a SparsityPattern, values: &'a mut [T]) -> Self {
Self {
current_lane_idx: 0,
pattern,
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remaining_values: values
}
}
}
impl<'a, T> Iterator for CsLaneIterMut<'a, T>
where
T: 'a
{
type Item = CsLaneMut<'a, T>;
fn next(&mut self) -> Option<Self::Item> {
let lane = self.pattern.get_lane(self.current_lane_idx);
let minor_dim = self.pattern.minor_dim();
if let Some(minor_indices) = lane {
let count = minor_indices.len();
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let remaining = replace(&mut self.remaining_values, &mut []);
let (values_in_lane, remaining) = remaining.split_at_mut(count);
self.remaining_values = remaining;
self.current_lane_idx += 1;
Some(CsLaneMut {
minor_dim,
minor_indices,
values: values_in_lane
})
} else {
None
}
}
}
/// Implement the methods common to both CsLane and CsLaneMut. See the documentation for the
/// methods delegated here by CsrMatrix and CscMatrix members for more information.
macro_rules! impl_cs_lane_common_methods {
($name:ty) => {
impl<'a, T> $name {
#[inline]
pub fn minor_dim(&self) -> usize {
self.minor_dim
}
#[inline]
pub fn nnz(&self) -> usize {
self.minor_indices.len()
}
#[inline]
pub fn minor_indices(&self) -> &[usize] {
self.minor_indices
}
#[inline]
pub fn values(&self) -> &[T] {
self.values
}
#[inline]
pub fn get_entry(&self, global_col_index: usize) -> Option<SparseEntry<T>> {
get_entry_from_slices(
self.minor_dim,
self.minor_indices,
self.values,
global_col_index)
}
}
}
}
impl_cs_lane_common_methods!(CsLane<'a, T>);
impl_cs_lane_common_methods!(CsLaneMut<'a, T>);
impl<'a, T> CsLaneMut<'a, T> {
pub fn values_mut(&mut self) -> &mut [T] {
self.values
}
pub fn indices_and_values_mut(&mut self) -> (&[usize], &mut [T]) {
(self.minor_indices, self.values)
}
pub fn get_entry_mut(&mut self, global_minor_index: usize) -> Option<SparseEntryMut<T>> {
get_mut_entry_from_slices(self.minor_dim,
self.minor_indices,
self.values,
global_minor_index)
}
}