From 3ba6242f11ce66cabb92ea81621619c01390d619 Mon Sep 17 00:00:00 2001 From: Sebastien Bourdeauducq Date: Sat, 11 Jun 2022 22:31:48 +0800 Subject: [PATCH] NixOS 22.05 --- README | 8 +- bootstrap/configuration.nix | 53 --------- final/configuration.nix | 9 +- final/flake.nix | 2 +- final/spyder/autopep8/default.nix | 31 ------ final/spyder/black/default.nix | 85 -------------- final/spyder/default.nix | 23 ---- final/spyder/ipykernel/4.nix | 41 ------- final/spyder/ipykernel/default.nix | 50 --------- final/spyder/ipykernel/tests.nix | 57 ---------- final/spyder/ipython/5.nix | 72 ------------ final/spyder/ipython/7.16.nix | 69 ------------ final/spyder/ipython/default.nix | 73 ------------ final/spyder/jupyter-client/5.nix | 40 ------- final/spyder/jupyter-client/default.nix | 43 -------- final/spyder/python-lsp-black/default.nix | 32 ------ final/spyder/python-lsp-server/default.nix | 108 ------------------ final/spyder/qdarkstyle/default.nix | 29 ----- final/spyder/qtconsole/default.nix | 38 ------- final/spyder/qtpy/default.nix | 27 ----- final/spyder/spyder-kernels/default.nix | 32 ------ final/spyder/spyder/default.nix | 122 --------------------- 22 files changed, 9 insertions(+), 1035 deletions(-) delete mode 100644 bootstrap/configuration.nix delete mode 100644 final/spyder/autopep8/default.nix delete mode 100644 final/spyder/black/default.nix delete mode 100644 final/spyder/default.nix delete mode 100644 final/spyder/ipykernel/4.nix delete mode 100644 final/spyder/ipykernel/default.nix delete mode 100644 final/spyder/ipykernel/tests.nix delete mode 100644 final/spyder/ipython/5.nix delete mode 100644 final/spyder/ipython/7.16.nix delete mode 100644 final/spyder/ipython/default.nix delete mode 100644 final/spyder/jupyter-client/5.nix delete mode 100644 final/spyder/jupyter-client/default.nix delete mode 100644 final/spyder/python-lsp-black/default.nix delete mode 100644 final/spyder/python-lsp-server/default.nix delete mode 100644 final/spyder/qdarkstyle/default.nix delete mode 100644 final/spyder/qtconsole/default.nix delete mode 100644 final/spyder/qtpy/default.nix delete mode 100644 final/spyder/spyder-kernels/default.nix delete mode 100644 final/spyder/spyder/default.nix diff --git a/README b/README index 6bc6db2..cd09a61 100644 --- a/README +++ b/README @@ -10,13 +10,11 @@ mount /dev/disk/by-label/nixos /mnt mkdir -p /mnt/boot mount /dev/disk/by-label/boot /mnt/boot nixos-generate-config --root /mnt -# copy bootstrap configuration to /mnt/etc/nixos -nixos-install +# copy configuration to /mnt/etc/nixos +nix-env -i git +nixos-install --flake /mnt/etc/nixos#artiq reboot # run memtest86 -# copy final configuration to /etc/nixos -nixos-rebuild --upgrade boot -reboot After installation is finalized: * copy device database to ~/artiq diff --git a/bootstrap/configuration.nix b/bootstrap/configuration.nix deleted file mode 100644 index 6a4547d..0000000 --- a/bootstrap/configuration.nix +++ /dev/null @@ -1,53 +0,0 @@ -{ config, pkgs, ... }: - -{ - imports = - [ - ./hardware-configuration.nix - ]; - - boot.loader.systemd-boot.enable = true; - boot.loader.efi.canTouchEfiVariables = true; - boot.loader.systemd-boot.memtest86.enable = true; - nixpkgs.config.allowUnfree = true; - - networking.hostName = "artiq"; - - time.timeZone = "Asia/Hong_Kong"; - - networking.useDHCP = false; - networking.interfaces.enp89s0.useDHCP = true; - - services.openssh.enable = true; - services.openssh.passwordAuthentication = false; - - environment.systemPackages = with pkgs; [ git ]; - - users.extraUsers.rabi = { - isNormalUser = true; - extraGroups = ["wheel"]; - openssh.authorizedKeys.keys = [ - "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCyPk5WyFoWSvF4ozehxcVBoZ+UHgrI7VW/OoQfFFwIQe0qvetUZBMZwR2FwkLPAMZV8zz1v4EfncudEkVghy4P+/YVLlDjqDq9zwZnh8Nd/ifu84wmcNWHT2UcqnhjniCdshL8a44memzABnxfLLv+sXhP2x32cJAamo5y6fukr2qLp2jbXzR+3sv3klE0ruUXis/BR1lLqNJEYP8jB6fLn2sLKinnZPfn6DwVOk10mGeQsdME/eGl3phpjhODH9JW5V2V5nJBbC0rBnq+78dyArKVqjPSmIcSy72DEIpTctnMEN1W34BGrnsDd5Xd/DKxKxHKTMCHtZRwLC2X0NWN" - "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCMALVC8RDTHec+PC8y1s3tcpUAODgq6DEzQdHDf/cyvDMfmCaPiMxfIdmkns5lMa03hymIfSmLUF0jFFDc7biRp7uf9AAXNsrTmplHii0l0McuOOZGlSdZM4eL817P7UwJqFMxJyFXDjkubhQiX6kp25Kfuj/zLnupRCaiDvE7ho/xay6Jrv0XLz935TPDwkc7W1asLIvsZLheB+sRz9SMOb9gtrvk5WXZl5JTOFOLu+JaRwQLHL/xdcHJTOod7tqHYfpoC5JHrEwKzbhTOwxZBQBfTQjQktKENQtBxXHTe71rUEWfEZQGg60/BC4BrRmh4qJjlJu3v4VIhC7SSHn1" - ]; - }; - users.extraUsers.root = { - openssh.authorizedKeys.keys = [ - "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCyPk5WyFoWSvF4ozehxcVBoZ+UHgrI7VW/OoQfFFwIQe0qvetUZBMZwR2FwkLPAMZV8zz1v4EfncudEkVghy4P+/YVLlDjqDq9zwZnh8Nd/ifu84wmcNWHT2UcqnhjniCdshL8a44memzABnxfLLv+sXhP2x32cJAamo5y6fukr2qLp2jbXzR+3sv3klE0ruUXis/BR1lLqNJEYP8jB6fLn2sLKinnZPfn6DwVOk10mGeQsdME/eGl3phpjhODH9JW5V2V5nJBbC0rBnq+78dyArKVqjPSmIcSy72DEIpTctnMEN1W34BGrnsDd5Xd/DKxKxHKTMCHtZRwLC2X0NWN" - "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCMALVC8RDTHec+PC8y1s3tcpUAODgq6DEzQdHDf/cyvDMfmCaPiMxfIdmkns5lMa03hymIfSmLUF0jFFDc7biRp7uf9AAXNsrTmplHii0l0McuOOZGlSdZM4eL817P7UwJqFMxJyFXDjkubhQiX6kp25Kfuj/zLnupRCaiDvE7ho/xay6Jrv0XLz935TPDwkc7W1asLIvsZLheB+sRz9SMOb9gtrvk5WXZl5JTOFOLu+JaRwQLHL/xdcHJTOod7tqHYfpoC5JHrEwKzbhTOwxZBQBfTQjQktKENQtBxXHTe71rUEWfEZQGg60/BC4BrRmh4qJjlJu3v4VIhC7SSHn1" - ]; - }; - security.sudo.wheelNeedsPassword = false; - nix.package = pkgs.nix_2_4; - nix.extraOptions = '' - experimental-features = nix-command flakes - ''; - - # This value determines the NixOS release from which the default - # settings for stateful data, like file locations and database versions - # on your system were taken. It‘s perfectly fine and recommended to leave - # this value at the release version of the first install of this system. - # Before changing this value read the documentation for this option - # (e.g. man configuration.nix or on https://nixos.org/nixos/options.html). - system.stateVersion = "21.11"; # Did you read the comment? -} diff --git a/final/configuration.nix b/final/configuration.nix index ee85feb..7fc3e5f 100644 --- a/final/configuration.nix +++ b/final/configuration.nix @@ -8,7 +8,7 @@ boot.loader.systemd-boot.enable = true; boot.loader.efi.canTouchEfiVariables = true; - boot.kernelPackages = pkgs.linuxPackages_5_15; + boot.loader.systemd-boot.memtest86.enable = true; hardware.cpu.intel.updateMicrocode = true; networking.hostName = "artiq"; @@ -58,7 +58,7 @@ artiq.packages.x86_64-linux.openocd-bscanspi texlive.combined.scheme-full psmisc - xc3sprog + #xc3sprog gtkwave unzip zip @@ -98,9 +98,11 @@ users.mutableUsers = true; users.defaultUserShell = pkgs.fish; users.extraGroups.plugdev = { }; + users.extraUsers.root.initialPassword = "rabi"; users.extraUsers.rabi = { isNormalUser = true; extraGroups = ["networkmanager" "wheel" "plugdev" "dialout" "wireshark"]; + initialPassword = "rabi"; openssh.authorizedKeys.keys = [ "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCyPk5WyFoWSvF4ozehxcVBoZ+UHgrI7VW/OoQfFFwIQe0qvetUZBMZwR2FwkLPAMZV8zz1v4EfncudEkVghy4P+/YVLlDjqDq9zwZnh8Nd/ifu84wmcNWHT2UcqnhjniCdshL8a44memzABnxfLLv+sXhP2x32cJAamo5y6fukr2qLp2jbXzR+3sv3klE0ruUXis/BR1lLqNJEYP8jB6fLn2sLKinnZPfn6DwVOk10mGeQsdME/eGl3phpjhODH9JW5V2V5nJBbC0rBnq+78dyArKVqjPSmIcSy72DEIpTctnMEN1W34BGrnsDd5Xd/DKxKxHKTMCHtZRwLC2X0NWN" "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCMALVC8RDTHec+PC8y1s3tcpUAODgq6DEzQdHDf/cyvDMfmCaPiMxfIdmkns5lMa03hymIfSmLUF0jFFDc7biRp7uf9AAXNsrTmplHii0l0McuOOZGlSdZM4eL817P7UwJqFMxJyFXDjkubhQiX6kp25Kfuj/zLnupRCaiDvE7ho/xay6Jrv0XLz935TPDwkc7W1asLIvsZLheB+sRz9SMOb9gtrvk5WXZl5JTOFOLu+JaRwQLHL/xdcHJTOod7tqHYfpoC5JHrEwKzbhTOwxZBQBfTQjQktKENQtBxXHTe71rUEWfEZQGg60/BC4BrRmh4qJjlJu3v4VIhC7SSHn1" @@ -109,7 +111,6 @@ security.sudo.wheelNeedsPassword = false; services.udev.packages = [ artiq.packages.x86_64-linux.openocd-bscanspi ]; - nix.package = pkgs.nix_2_4; nix.binaryCachePublicKeys = ["nixbld.m-labs.hk-1:5aSRVA5b320xbNvu30tqxVPXpld73bhtOeH6uAjRyHc="]; nix.binaryCaches = ["https://nixbld.m-labs.hk" "https://cache.nixos.org"]; nix.extraOptions = '' @@ -121,5 +122,5 @@ # compatible, in order to avoid breaking some software such as database # servers. You should change this only after NixOS release notes say you # should. - system.stateVersion = "21.11"; # Did you read the comment? + system.stateVersion = "22.05"; # Did you read the comment? } diff --git a/final/flake.nix b/final/flake.nix index fbae926..813744d 100644 --- a/final/flake.nix +++ b/final/flake.nix @@ -4,7 +4,7 @@ nixosConfigurations.artiq = artiq.inputs.nixpkgs.lib.nixosSystem { system = "x86_64-linux"; specialArgs = { inherit artiq; }; - modules = [ ./configuration.nix ./spyder ]; + modules = [ ./configuration.nix ]; }; }; } diff --git a/final/spyder/autopep8/default.nix b/final/spyder/autopep8/default.nix deleted file mode 100644 index abf3a3d..0000000 --- a/final/spyder/autopep8/default.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ lib, fetchPypi, buildPythonPackage, pycodestyle, glibcLocales -, toml -}: - -buildPythonPackage rec { - pname = "autopep8"; - version = "1.6.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-RPCTKFUDnSwVxFENbfZl5HMPK4WCcE+kj5xVvT4X2Xk="; - }; - - propagatedBuildInputs = [ pycodestyle toml ]; - - # One test fails: - # FAIL: test_recursive_should_not_crash_on_unicode_filename (test.test_autopep8.CommandLineTests) -# doCheck = false; - - checkInputs = [ glibcLocales ]; - - LC_ALL = "en_US.UTF-8"; - - meta = with lib; { - description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"; - homepage = "https://pypi.python.org/pypi/autopep8/"; - license = licenses.mit; - platforms = platforms.all; - maintainers = with maintainers; [ bjornfor ]; - }; -} diff --git a/final/spyder/black/default.nix b/final/spyder/black/default.nix deleted file mode 100644 index a9811a2..0000000 --- a/final/spyder/black/default.nix +++ /dev/null @@ -1,85 +0,0 @@ -{ stdenv, lib -, buildPythonPackage, fetchPypi, pythonOlder, setuptools-scm, pytestCheckHook -, aiohttp -, aiohttp-cors -, attrs -, click -, colorama -, dataclasses -, mypy-extensions -, pathspec -, parameterized -, platformdirs -, regex -, tomli -, typed-ast -, typing-extensions -, uvloop -}: - - -buildPythonPackage rec { - pname = "black"; - version = "22.3.0"; - - disabled = pythonOlder "3.6"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-NQILiIbAIs7ZKCtRtah1ttGrDDh7MaBluE23wzCFynk="; - }; - - nativeBuildInputs = [ setuptools-scm ]; - - # Necessary for the tests to pass on Darwin with sandbox enabled. - # Black starts a local server and needs to bind a local address. - __darwinAllowLocalNetworking = true; - - checkInputs = [ pytestCheckHook parameterized ]; - - preCheck = '' - export PATH="$PATH:$out/bin" - - # The top directory /build matches black's DEFAULT_EXCLUDE regex. - # Make /build the project root for black tests to avoid excluding files. - touch ../.git - '' + lib.optionalString stdenv.isDarwin '' - # Work around https://github.com/psf/black/issues/2105 - export TMPDIR="/tmp" - ''; - - disabledTests = [ - # requires network access - "test_gen_check_output" - ] ++ lib.optionals stdenv.isDarwin [ - # fails on darwin - "test_expression_diff" - # Fail on Hydra, see https://github.com/NixOS/nixpkgs/pull/130785 - "test_bpo_2142_workaround" - "test_skip_magic_trailing_comma" - ]; - - propagatedBuildInputs = [ - aiohttp - aiohttp-cors - attrs - click - colorama - mypy-extensions - pathspec - platformdirs - regex - tomli - typed-ast # required for tests and python2 extra - uvloop - ] ++ lib.optional (pythonOlder "3.7") dataclasses - ++ lib.optional (pythonOlder "3.8") typing-extensions; - - meta = with lib; { - description = "The uncompromising Python code formatter"; - homepage = "https://github.com/psf/black"; - changelog = "https://github.com/psf/black/blob/${version}/CHANGES.md"; - license = licenses.mit; - maintainers = with maintainers; [ sveitser autophagy ]; - }; -} diff --git a/final/spyder/default.nix b/final/spyder/default.nix deleted file mode 100644 index 9c438aa..0000000 --- a/final/spyder/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ config, pkgs, ... }: -{ - # https://github.com/NixOS/nixpkgs/issues/171613 - nixpkgs.overlays = [ (self: super: rec { - python3 = super.python3.override { - packageOverrides = pyself: pysuper: { - autopep8 = pysuper.pkgs.python3Packages.callPackage ./autopep8 {}; - black = pysuper.pkgs.python3Packages.callPackage ./black {}; - ipykernel = pysuper.pkgs.python3Packages.callPackage ./ipykernel {}; - ipython = pysuper.pkgs.python3Packages.callPackage ./ipython {}; - jupyter-client = pysuper.pkgs.python3Packages.callPackage ./jupyter-client {}; - python-lsp-black = pysuper.pkgs.python3Packages.callPackage ./python-lsp-black {}; - python-lsp-server = pysuper.pkgs.python3Packages.callPackage ./python-lsp-server {}; - qdarkstyle = pysuper.pkgs.python3Packages.callPackage ./qdarkstyle {}; - qtconsole = pysuper.pkgs.python3Packages.callPackage ./qtconsole {}; - qtpy = pysuper.pkgs.python3Packages.callPackage ./qtpy {}; - spyder-kernels = pysuper.pkgs.python3Packages.callPackage ./spyder-kernels {}; - spyder = pysuper.pkgs.python3Packages.callPackage ./spyder {}; - }; - }; - python3Packages = python3.pkgs; - }) ]; -} diff --git a/final/spyder/ipykernel/4.nix b/final/spyder/ipykernel/4.nix deleted file mode 100644 index 7530b55..0000000 --- a/final/spyder/ipykernel/4.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, nose -, isPy27 -, mock -, ipython -, jupyter-client -, pexpect -, traitlets -, tornado -}: - -buildPythonPackage rec { - pname = "ipykernel"; - version = "4.10.1"; - - src = fetchPypi { - inherit pname version; - sha256 = "eeb74b2bcfe0ced5a7900361f98fa1171288aa47ed4b522efe5acb167c6cf5fb"; - }; - - checkInputs = [ nose ] ++ lib.optional isPy27 mock; - propagatedBuildInputs = [ - ipython - jupyter-client - pexpect - traitlets - tornado - ]; - - # Tests require backends. - # I don't want to add all supported backends as propagatedBuildInputs - doCheck = false; - - meta = { - description = "IPython Kernel for Jupyter"; - homepage = "http://ipython.org/"; - license = lib.licenses.bsd3; - }; -} diff --git a/final/spyder/ipykernel/default.nix b/final/spyder/ipykernel/default.nix deleted file mode 100644 index fc4f49c..0000000 --- a/final/spyder/ipykernel/default.nix +++ /dev/null @@ -1,50 +0,0 @@ -{ lib -, buildPythonPackage -, callPackage -, fetchPypi -, pythonOlder -, argcomplete -, debugpy -, ipython -, jupyter-client -, tornado -, traitlets -, psutil -, packaging -}: - -buildPythonPackage rec { - pname = "ipykernel"; - version = "6.13.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-DignPikIWDk+huFSsQTlUGp5wT0luVGsbsoiAFG0vmA="; - }; - - propagatedBuildInputs = [ - debugpy - ipython - jupyter-client - tornado - traitlets - psutil - packaging - ] ++ lib.optionals (pythonOlder "3.8") [ - argcomplete - ]; - - # check in passthru.tests.pytest to escape infinite recursion with ipyparallel - doCheck = false; - - passthru.tests = { - pytest = callPackage ./tests.nix { }; - }; - - meta = { - description = "IPython Kernel for Jupyter"; - homepage = "http://ipython.org/"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ fridh ]; - }; -} diff --git a/final/spyder/ipykernel/tests.nix b/final/spyder/ipykernel/tests.nix deleted file mode 100644 index 9375dbc..0000000 --- a/final/spyder/ipykernel/tests.nix +++ /dev/null @@ -1,57 +0,0 @@ -{ lib -, stdenv -, buildPythonPackage -, pythonOlder -, flaky -, ipykernel -, ipyparallel -, nose -, pytestCheckHook - -}: - -buildPythonPackage rec { - pname = "ipykernel-tests"; - inherit (ipykernel) version; - - src = ipykernel.src; - - dontBuild = true; - dontInstall = true; - - checkInputs = [ - flaky - ipykernel - ipyparallel - nose - pytestCheckHook - ]; - - preCheck = '' - export HOME=$(mktemp -d) - ''; - - disabledTests = lib.optionals stdenv.isDarwin ([ - # see https://github.com/NixOS/nixpkgs/issues/76197 - "test_subprocess_print" - "test_subprocess_error" - "test_ipython_start_kernel_no_userns" - - # https://github.com/ipython/ipykernel/issues/506 - "test_unc_paths" - ] ++ lib.optionals (pythonOlder "3.8") [ - # flaky test https://github.com/ipython/ipykernel/issues/485 - "test_shutdown" - - # test regression https://github.com/ipython/ipykernel/issues/486 - "test_sys_path_profile_dir" - "test_save_history" - "test_help_output" - "test_write_kernel_spec" - "test_ipython_start_kernel_userns" - "ZMQDisplayPublisherTests" - ]); - - # Some of the tests use localhost networking. - __darwinAllowLocalNetworking = true; -} diff --git a/final/spyder/ipython/5.nix b/final/spyder/ipython/5.nix deleted file mode 100644 index 45096bf..0000000 --- a/final/spyder/ipython/5.nix +++ /dev/null @@ -1,72 +0,0 @@ -{ lib -, stdenv -, buildPythonPackage -, fetchPypi -, fetchpatch -# Build dependencies -, glibcLocales -# Test dependencies -, nose -, pygments -, testpath -, isPy27 -, mock -# Runtime dependencies -, backports_shutil_get_terminal_size -, decorator -, pathlib2 -, pickleshare -, requests -, simplegeneric -, traitlets -, prompt-toolkit -, pexpect -, appnope -}: - -buildPythonPackage rec { - pname = "ipython"; - version = "5.8.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "4bac649857611baaaf76bc82c173aa542f7486446c335fe1a6c05d0d491c8906"; - }; - - prePatch = lib.optionalString stdenv.isDarwin '' - substituteInPlace setup.py --replace "'gnureadline'" " " - ''; - - patches = [ - # Use the proper pygments lexer for python2 (https://github.com/ipython/ipython/pull/12095) - (fetchpatch { - name = "python2-lexer.patch"; - url = "https://github.com/ipython/ipython/pull/12095/commits/8805293b5e4bce9150cc2ad9c5d6d984849ae447.patch"; - sha256 = "16p4gl7a49v76w33j39ih7yspy6x2d14p9bh4wdpg9cafhw9nbc0"; - }) - ]; - - buildInputs = [ glibcLocales ]; - - checkInputs = [ nose pygments testpath ] ++ lib.optional isPy27 mock; - - propagatedBuildInputs = [ - backports_shutil_get_terminal_size decorator pickleshare prompt-toolkit - simplegeneric traitlets requests pathlib2 pexpect - ] ++ lib.optionals stdenv.isDarwin [ appnope ]; - - LC_ALL="en_US.UTF-8"; - - doCheck = false; # Circular dependency with ipykernel - - checkPhase = '' - nosetests - ''; - - meta = { - description = "IPython: Productive Interactive Computing"; - homepage = "http://ipython.org/"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ bjornfor orivej lnl7 ]; - }; -} diff --git a/final/spyder/ipython/7.16.nix b/final/spyder/ipython/7.16.nix deleted file mode 100644 index 1f62cc9..0000000 --- a/final/spyder/ipython/7.16.nix +++ /dev/null @@ -1,69 +0,0 @@ -{ lib -, stdenv -, buildPythonPackage -, fetchPypi -, pythonOlder -# Build dependencies -, glibcLocales -# Test dependencies -, nose -, pygments -# Runtime dependencies -, jedi -, decorator -, pickleshare -, traitlets -, prompt-toolkit -, pexpect -, appnope -, backcall -}: - -buildPythonPackage rec { - pname = "ipython"; - version = "7.16.1"; - disabled = pythonOlder "3.6"; - - src = fetchPypi { - inherit pname version; - sha256 = "9f4fcb31d3b2c533333893b9172264e4821c1ac91839500f31bd43f2c59b3ccf"; - }; - - prePatch = lib.optionalString stdenv.isDarwin '' - substituteInPlace setup.py --replace "'gnureadline'" " " - ''; - - buildInputs = [ glibcLocales ]; - - checkInputs = [ nose pygments ]; - - propagatedBuildInputs = [ - jedi - decorator - pickleshare - traitlets - prompt-toolkit - pygments - pexpect - backcall - ] ++ lib.optionals stdenv.isDarwin [appnope]; - - LC_ALL="en_US.UTF-8"; - - doCheck = false; # Circular dependency with ipykernel - - checkPhase = '' - nosetests - ''; - - pythonImportsCheck = [ - "IPython" - ]; - - meta = with lib; { - description = "IPython: Productive Interactive Computing"; - homepage = "http://ipython.org/"; - license = licenses.bsd3; - maintainers = with maintainers; [ bjornfor fridh ]; - }; -} diff --git a/final/spyder/ipython/default.nix b/final/spyder/ipython/default.nix deleted file mode 100644 index 4342d6c..0000000 --- a/final/spyder/ipython/default.nix +++ /dev/null @@ -1,73 +0,0 @@ -{ lib -, stdenv -, buildPythonPackage -, fetchPypi -, fetchpatch -, pythonOlder -# Build dependencies -, glibcLocales -# Test dependencies -, nose -, pygments -# Runtime dependencies -, jedi -, decorator -, matplotlib-inline -, pickleshare -, traitlets -, prompt-toolkit -, pexpect -, appnope -, backcall -, pytest -}: - -buildPythonPackage rec { - pname = "ipython"; - version = "7.33.0"; - disabled = pythonOlder "3.7"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-vP+4Zag7CBYgMBug7E2VCERU8muR1tZrR1v/PfsCGNQ="; - }; - - prePatch = lib.optionalString stdenv.isDarwin '' - substituteInPlace setup.py --replace "'gnureadline'" " " - ''; - - buildInputs = [ glibcLocales ]; - - propagatedBuildInputs = [ - jedi - decorator - matplotlib-inline - pickleshare - traitlets - prompt-toolkit - pygments - pexpect - backcall - ] ++ lib.optionals stdenv.isDarwin [appnope]; - - LC_ALL="en_US.UTF-8"; - - # full tests normally disabled due to a circular dependency with - # ipykernel, but we want to test the CVE-2022-21699 fix in this - # branch - checkInputs = [ pytest ]; - checkPhase = '' - pytest IPython/tests/cve.py - ''; - - pythonImportsCheck = [ - "IPython" - ]; - - meta = with lib; { - description = "IPython: Productive Interactive Computing"; - homepage = "http://ipython.org/"; - license = licenses.bsd3; - maintainers = with maintainers; [ bjornfor fridh ]; - }; -} diff --git a/final/spyder/jupyter-client/5.nix b/final/spyder/jupyter-client/5.nix deleted file mode 100644 index 0894744..0000000 --- a/final/spyder/jupyter-client/5.nix +++ /dev/null @@ -1,40 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, traitlets -, jupyter_core -, pyzmq -, python-dateutil -, isPyPy -, py -, tornado -}: - -buildPythonPackage rec { - pname = "jupyter-client"; - version = "5.3.5"; - - src = fetchPypi { - pname = "jupyter_client"; - inherit version; - sha256 = "5efdf4131124d4a0d5789101e74827022585f172d2f4b60cf6fa98e0a7511b25"; - }; - - propagatedBuildInputs = [ - traitlets - jupyter_core - pyzmq - python-dateutil - tornado - ] ++ lib.optional isPyPy py; - - # Circular dependency with ipykernel - doCheck = false; - - meta = { - description = "Jupyter protocol implementation and client libraries"; - homepage = "https://jupyter.org/"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ ]; - }; -} diff --git a/final/spyder/jupyter-client/default.nix b/final/spyder/jupyter-client/default.nix deleted file mode 100644 index e15d3b8..0000000 --- a/final/spyder/jupyter-client/default.nix +++ /dev/null @@ -1,43 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, entrypoints -, jupyter_core -, nest-asyncio -, python-dateutil -, pyzmq -, tornado -, traitlets -, isPyPy -, py -}: - -buildPythonPackage rec { - pname = "jupyter_client"; - version = "7.1.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-pfmVpzz/sxTtJicTrm385TxrghbOqfMyBxuP9EpuFlQ="; - }; - - propagatedBuildInputs = [ - entrypoints - jupyter_core - nest-asyncio - python-dateutil - pyzmq - tornado - traitlets - ] ++ lib.optional isPyPy py; - - # Circular dependency with ipykernel - doCheck = false; - - meta = { - description = "Jupyter protocol implementation and client libraries"; - homepage = "https://jupyter.org/"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ fridh ]; - }; -} diff --git a/final/spyder/python-lsp-black/default.nix b/final/spyder/python-lsp-black/default.nix deleted file mode 100644 index d1d3c1d..0000000 --- a/final/spyder/python-lsp-black/default.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ lib -, black -, buildPythonPackage -, fetchFromGitHub -, pytestCheckHook -, python-lsp-server -, pythonOlder -}: - -buildPythonPackage rec { - pname = "python-lsp-black"; - version = "1.2.1"; - disabled = pythonOlder "3.6"; - - src = fetchFromGitHub { - owner = "python-lsp"; - repo = "python-lsp-black"; - rev = "v${version}"; - sha256 = "sha256-qNA6Bj1VI0YEtRuvcMQZGWakQNNrJ2PqhozrLmQHPAg="; - }; - - checkInputs = [ pytestCheckHook ]; - - propagatedBuildInputs = [ black python-lsp-server ]; - - meta = with lib; { - homepage = "https://github.com/python-lsp/python-lsp-black"; - description = "Black plugin for the Python LSP Server"; - license = licenses.mit; - maintainers = with maintainers; [ cpcloud ]; - }; -} diff --git a/final/spyder/python-lsp-server/default.nix b/final/spyder/python-lsp-server/default.nix deleted file mode 100644 index ce8c7da..0000000 --- a/final/spyder/python-lsp-server/default.nix +++ /dev/null @@ -1,108 +0,0 @@ -{ lib -, autopep8 -, buildPythonPackage -, fetchPypi -, flake8 -, flaky -, jedi -, matplotlib -, mccabe -, numpy -, pandas -, pluggy -, pycodestyle -, pydocstyle -, pyflakes -, pylint -, pyqt5 -, pytestCheckHook -, python-lsp-jsonrpc -, pythonOlder -, rope -, setuptools -, setuptools_scm -, ujson -, yapf -, withAutopep8 ? true -, withFlake8 ? true -, withMccabe ? true -, withPycodestyle ? true -, withPydocstyle ? true -, withPyflakes ? true -, withPylint ? true -, withRope ? true -, withYapf ? true -}: - -buildPythonPackage rec { - pname = "python-lsp-server"; - version = "1.4.1"; - disabled = pythonOlder "3.6"; - - src = fetchPypi { - pname = "python-lsp-server"; - inherit version; - sha256 = "sha256-vn+DKYr58JUak5csr8nbBP189cBfIIElFSdfC6cONC8="; - }; - - postPatch = '' - substituteInPlace setup.cfg \ - --replace "--cov-report html --cov-report term --junitxml=pytest.xml" "" \ - --replace "--cov pylsp --cov test" "" - ''; - - propagatedBuildInputs = [ - jedi - pluggy - python-lsp-jsonrpc - setuptools - setuptools_scm - ujson - ] ++ lib.optional withAutopep8 autopep8 - ++ lib.optional withFlake8 flake8 - ++ lib.optional withMccabe mccabe - ++ lib.optional withPycodestyle pycodestyle - ++ lib.optional withPydocstyle pydocstyle - ++ lib.optional withPyflakes pyflakes - ++ lib.optional withPylint pylint - ++ lib.optional withRope rope - ++ lib.optional withYapf yapf; - - checkInputs = [ - flaky - matplotlib - numpy - pandas - pyqt5 - pytestCheckHook - ]; - - disabledTests = [ - # pytlint output changed - "test_lint_free_pylint" - ] ++ lib.optional (!withPycodestyle) "test_workspace_loads_pycodestyle_config"; - - disabledTestPaths = lib.optional (!withAutopep8) "test/plugins/test_autopep8_format.py" - ++ lib.optional (!withRope) "test/plugins/test_completion.py" - ++ lib.optional (!withFlake8) "test/plugins/test_flake8_lint.py" - ++ lib.optional (!withMccabe) "test/plugins/test_mccabe_lint.py" - ++ lib.optional (!withPycodestyle) "test/plugins/test_pycodestyle_lint.py" - ++ lib.optional (!withPydocstyle) "test/plugins/test_pydocstyle_lint.py" - ++ lib.optional (!withPyflakes) "test/plugins/test_pyflakes_lint.py" - ++ lib.optional (!withPylint) "test/plugins/test_pylint_lint.py" - ++ lib.optional (!withRope) "test/plugins/test_rope_rename.py" - ++ lib.optional (!withYapf) "test/plugins/test_yapf_format.py"; - - preCheck = '' - export HOME=$(mktemp -d); - ''; - - pythonImportsCheck = [ "pylsp" ]; - - meta = with lib; { - description = "Python implementation of the Language Server Protocol"; - homepage = "https://github.com/python-lsp/python-lsp-server"; - license = licenses.mit; - maintainers = with maintainers; [ fab ]; - }; -} diff --git a/final/spyder/qdarkstyle/default.nix b/final/spyder/qdarkstyle/default.nix deleted file mode 100644 index cab81bc..0000000 --- a/final/spyder/qdarkstyle/default.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ lib -, fetchPypi -, buildPythonPackage -, helpdev -, qtpy -}: - -buildPythonPackage rec { - pname = "qdarkstyle"; - version = "3.0.3"; - - src = fetchPypi { - inherit version; - pname = "QDarkStyle"; - sha256 = "sha256-k20tNbVS9CmAOphdvBf8h5ovlm+qn7+Jg4lsz6M+aPY="; - }; - - # No tests available - doCheck = false; - - propagatedBuildInputs = [ helpdev qtpy ]; - - meta = with lib; { - description = "A dark stylesheet for Python and Qt applications"; - homepage = "https://github.com/ColinDuquesnoy/QDarkStyleSheet"; - license = licenses.mit; - maintainers = with maintainers; [ nyanloutre ]; - }; -} diff --git a/final/spyder/qtconsole/default.nix b/final/spyder/qtconsole/default.nix deleted file mode 100644 index f9eecbe..0000000 --- a/final/spyder/qtconsole/default.nix +++ /dev/null @@ -1,38 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, nose -, isPy27 -, mock -, traitlets -, jupyter_core -, jupyter-client -, pygments -, ipykernel -, pyqt5 -, qtpy -}: - -buildPythonPackage rec { - pname = "qtconsole"; - version = "5.3.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-jjUg/cdeRqvEzGz/7KFvomUnVBCbiug5+ijifR66ViU="; - }; - - checkInputs = [ nose ] ++ lib.optionals isPy27 [mock]; - propagatedBuildInputs = [traitlets jupyter_core jupyter-client pygments ipykernel pyqt5 qtpy]; - - # : cannot connect to X server - doCheck = false; - - meta = { - description = "Jupyter Qt console"; - homepage = "https://jupyter.org/"; - license = lib.licenses.bsd3; - platforms = lib.platforms.unix; - maintainers = with lib.maintainers; [ fridh ]; - }; -} diff --git a/final/spyder/qtpy/default.nix b/final/spyder/qtpy/default.nix deleted file mode 100644 index 9c78701..0000000 --- a/final/spyder/qtpy/default.nix +++ /dev/null @@ -1,27 +0,0 @@ -{ lib, buildPythonPackage, fetchPypi, pyside, pytest, packaging }: - -buildPythonPackage rec { - pname = "QtPy"; - version = "2.1.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-yozUIXF1GGNEKZ7kwPfnrc82LHCFK6NbJVpTQHcCXAY="; - }; - - propagatedBuildInputs = [ packaging ]; - - # no concrete propagatedBuildInputs as multiple backends are supposed - checkInputs = [ pyside pytest ]; - - doCheck = false; # require X - checkPhase = '' - py.test qtpy/tests - ''; - - meta = with lib; { - description = "Abstraction layer for PyQt5/PyQt4/PySide2/PySide"; - homepage = "https://github.com/spyder-ide/qtpy"; - license = licenses.mit; - }; -} diff --git a/final/spyder/spyder-kernels/default.nix b/final/spyder/spyder-kernels/default.nix deleted file mode 100644 index 95d54e4..0000000 --- a/final/spyder/spyder-kernels/default.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ lib, buildPythonPackage, fetchPypi, cloudpickle, ipykernel, wurlitzer, - jupyter-client, pyzmq }: - -buildPythonPackage rec { - pname = "spyder-kernels"; - version = "2.3.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-pdU20Oil53TX1hbBAqj6LWqkX9MwoLeZuY7vFYNW02w="; - }; - - propagatedBuildInputs = [ - cloudpickle - ipykernel - wurlitzer - jupyter-client - pyzmq - ]; - - # No tests - doCheck = false; - - meta = with lib; { - description = "Jupyter kernels for Spyder's console"; - homepage = "https://docs.spyder-ide.org/current/ipythonconsole.html"; - downloadPage = "https://github.com/spyder-ide/spyder-kernels/releases"; - changelog = "https://github.com/spyder-ide/spyder-kernels/blob/master/CHANGELOG.md"; - license = licenses.mit; - maintainers = with maintainers; [ gebner ]; - }; -} diff --git a/final/spyder/spyder/default.nix b/final/spyder/spyder/default.nix deleted file mode 100644 index 8943139..0000000 --- a/final/spyder/spyder/default.nix +++ /dev/null @@ -1,122 +0,0 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27, makeDesktopItem, intervaltree, - jedi, pycodestyle, psutil, rope, numpy, scipy, matplotlib, pylint, - keyring, numpydoc, qtconsole, qtawesome, nbconvert, mccabe, pyopengl, - cloudpickle, pygments, spyder-kernels, qtpy, pyzmq, chardet, qdarkstyle, - watchdog, python-lsp-server, pyqtwebengine, atomicwrites, pyxdg, - diff-match-patch, three-merge, python-lsp-black, pyls-spyder, flake8, textdistance, - cookiecutter, libspatialindex, fetchFromGitHub, pbr, inflection, tinycss2, jellyfish, - autopep8 -}: - -buildPythonPackage rec { - pname = "spyder"; - version = "5.3.0"; - - disabled = isPy27; - - src = fetchPypi { - inherit pname version; - sha256 = "sha256-ggCFvYUdUm5fVSpTZoN/OhNPJAQOyehwrQprYTzprbc="; - }; - - nativeBuildInputs = [ pyqtwebengine.wrapQtAppsHook ]; - - propagatedBuildInputs = [ - intervaltree jedi pycodestyle psutil rope numpy scipy matplotlib pylint keyring - numpydoc qtconsole qtawesome nbconvert mccabe pyopengl cloudpickle spyder-kernels - pygments qtpy pyzmq chardet pyqtwebengine qdarkstyle watchdog python-lsp-server - atomicwrites pyxdg diff-match-patch three-merge python-lsp-black pyls-spyder - flake8 textdistance cookiecutter jellyfish autopep8 - ( - buildPythonPackage rec { - pname = "Rtree"; - version = "1.0.0"; - propagatedBuildInputs = [ numpy ]; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-0Eg0ghITRrCTuaQlGNQPkhrfRFkVt66jB+smdoyDloI="; - }; - doCheck = false; - patchPhase = - '' - substituteInPlace rtree/finder.py --replace "_candidates = [" "_candidates = ['${libspatialindex}/lib'," - ''; - } - ) - ( - buildPythonPackage rec { - pname = "qstylizer"; - version = "0.2.1"; - propagatedBuildInputs = [ pbr inflection tinycss2 ]; - src = fetchFromGitHub { - owner = "blambright"; - repo = "qstylizer"; - rev = version; - sha256 = "sha256-iEMxBpS9gOPubd9O8zpVmR5B7+UZJFkPuOtikO1a9v0="; - }; - preBuild = '' - export PBR_VERSION=${version} - ''; - doCheck = false; - } - ) - ]; - - # There is no test for spyder - doCheck = false; - - desktopItem = makeDesktopItem { - name = "Spyder"; - exec = "spyder"; - icon = "spyder"; - comment = "Scientific Python Development Environment"; - desktopName = "Spyder"; - genericName = "Python IDE"; - categories = "Development;IDE;"; - }; - - postPatch = '' - # remove dependency on pyqtwebengine - # this is still part of the pyqt 5.11 version we have in nixpkgs - sed -i /pyqtwebengine/d setup.py - # The major version bump in watchdog is due to changes in supported - # platforms, not API break. - # https://github.com/gorakhargosh/watchdog/issues/761#issuecomment-777001518 - substituteInPlace setup.py \ - --replace "pyqt5<5.13" "pyqt5" \ - --replace "parso==0.7.0" "parso" \ - --replace "watchdog>=0.10.3,<2.0.0" "watchdog>=0.10.3,<3.0.0" - ''; - - postInstall = '' - # add Python libs to env so Spyder subprocesses - # created to run compute kernels don't fail with ImportErrors - wrapProgram $out/bin/spyder --prefix PYTHONPATH : "$PYTHONPATH" - - # Create desktop item - mkdir -p $out/share/icons - cp spyder/images/spyder.svg $out/share/icons - cp -r $desktopItem/share/applications/ $out/share - ''; - - dontWrapQtApps = true; - - preFixup = '' - makeWrapperArgs+=("''${qtWrapperArgs[@]}") - ''; - - meta = with lib; { - description = "Scientific python development environment"; - longDescription = '' - Spyder (previously known as Pydee) is a powerful interactive development - environment for the Python language with advanced editing, interactive - testing, debugging and introspection features. - ''; - homepage = "https://www.spyder-ide.org/"; - downloadPage = "https://github.com/spyder-ide/spyder/releases"; - changelog = "https://github.com/spyder-ide/spyder/blob/master/CHANGELOG.md"; - license = licenses.mit; - platforms = platforms.linux; - maintainers = with maintainers; [ gebner ]; - }; -}