{
  description = "A leading-edge control system for quantum information experiments";

  inputs.mozilla-overlay = { url = github:mozilla/nixpkgs-mozilla; flake = false; };
  inputs.sipyco.url = github:m-labs/sipyco;
  inputs.sipyco.inputs.nixpkgs.follows = "nac3/nixpkgs";
  inputs.nac3 = { type = "git"; url = "https://git.m-labs.hk/m-labs/nac3.git"; };
  inputs.artiq-comtools.url = github:m-labs/artiq-comtools;
  inputs.artiq-comtools.inputs.nixpkgs.follows = "nac3/nixpkgs";
  inputs.artiq-comtools.inputs.sipyco.follows = "sipyco";

  inputs.src-migen = { url = github:m-labs/migen; flake = false; };
  inputs.src-misoc = { type = "git"; url = "https://github.com/m-labs/misoc.git"; submodules = true; flake = false; };

  outputs = { self, mozilla-overlay, sipyco, nac3, artiq-comtools, src-migen, src-misoc }:
    let
      pkgs = import nac3.inputs.nixpkgs { system = "x86_64-linux"; overlays = [ (import mozilla-overlay) ]; };

      artiqVersionMajor = 9;
      artiqVersionMinor = self.sourceInfo.revCount or 0;
      artiqVersionId = self.sourceInfo.shortRev or "unknown";
      artiqVersion = (builtins.toString artiqVersionMajor) + "." + (builtins.toString artiqVersionMinor) + "." + artiqVersionId + ".beta";
      artiqRev = self.sourceInfo.rev or "unknown";

      rustManifest = pkgs.fetchurl {
        url = "https://static.rust-lang.org/dist/2021-01-29/channel-rust-nightly.toml";
        sha256 = "sha256-EZKgw89AH4vxaJpUHmIMzMW/80wAFQlfcxRoBD9nz0c=";
      };

      targets = [];
      rustChannelOfTargets = _channel: _date: targets:
        (pkgs.lib.rustLib.fromManifestFile rustManifest {
          inherit (pkgs) stdenv lib fetchurl patchelf;
        }).rust.override {
          inherit targets;
          extensions = ["rust-src"];
        };
      rust = rustChannelOfTargets "nightly" null targets;
      rustPlatform = pkgs.recurseIntoAttrs (pkgs.makeRustPlatform {
        rustc = rust;
        cargo = rust;
      });

      vivadoDeps = pkgs: with pkgs; [
        ncurses5
        zlib
        libuuid
        xorg.libSM
        xorg.libICE
        xorg.libXrender
        xorg.libX11
        xorg.libXext
        xorg.libXtst
        xorg.libXi
        freetype
        fontconfig
      ];

      qasync = pkgs.python3Packages.buildPythonPackage rec {
        pname = "qasync";
        version = "0.19.0";
        src = pkgs.fetchFromGitHub {
          owner = "CabbageDevelopment";
          repo = "qasync";
          rev = "v${version}";
          sha256 = "sha256-xGAUAyOq+ELwzMGbLLmXijxLG8pv4a6tPvfAVOt1YwU=";
        };
        propagatedBuildInputs = [ pkgs.python3Packages.pyqt5 ];
        checkInputs = [ pkgs.python3Packages.pytest ];
        checkPhase = ''
          pytest -k 'test_qthreadexec.py' # the others cause the test execution to be aborted, I think because of asyncio
        '';
      };

      artiq = pkgs.python3Packages.buildPythonPackage rec {
        pname = "artiq";
        version = artiqVersion;
        src = self;

        preBuild =
          ''
          export VERSIONEER_OVERRIDE=${version}
          export VERSIONEER_REV=${artiqRev}
          '';

        nativeBuildInputs = [ pkgs.qt5.wrapQtAppsHook ];
        # keep llvm_x in sync with nac3
        propagatedBuildInputs = [ pkgs.llvm_14 nac3.packages.x86_64-linux.nac3artiq-pgo sipyco.packages.x86_64-linux.sipyco artiq-comtools.packages.x86_64-linux.artiq-comtools ]
          ++ (with pkgs.python3Packages; [ pyqtgraph pygit2 numpy dateutil scipy prettytable pyserial h5py pyqt5 qasync ]);

        dontWrapQtApps = true;
        postFixup = ''
          wrapQtApp "$out/bin/artiq_dashboard"
          wrapQtApp "$out/bin/artiq_browser"
          wrapQtApp "$out/bin/artiq_session"
        '';

        # Modifies PATH to pass the wrapped python environment (i.e. python3.withPackages(...) to subprocesses.
        # Allows subprocesses using python to find all packages you have installed
        makeWrapperArgs = [
          ''--run 'if [ ! -z "$NIX_PYTHONPREFIX" ]; then export PATH=$NIX_PYTHONPREFIX/bin:$PATH;fi' ''
          "--set FONTCONFIG_FILE ${pkgs.fontconfig.out}/etc/fonts/fonts.conf"
        ];

        # FIXME: automatically propagate llvm_x dependency
        checkInputs = [ pkgs.llvm_14 ];
        checkPhase = ''
          python -m unittest discover -v artiq.test
          '';
      };

      migen = pkgs.python3Packages.buildPythonPackage rec {
        name = "migen";
        src = src-migen;
        propagatedBuildInputs = [ pkgs.python3Packages.colorama ];
      };

      asyncserial = pkgs.python3Packages.buildPythonPackage rec {
        pname = "asyncserial";
        version = "0.1";
        src = pkgs.fetchFromGitHub {
          owner = "m-labs";
          repo = "asyncserial";
          rev = "d95bc1d6c791b0e9785935d2f62f628eb5cdf98d";
          sha256 = "0yzkka9jk3612v8gx748x6ziwykq5lr7zmr9wzkcls0v2yilqx9k";
        };
        propagatedBuildInputs = [ pkgs.python3Packages.pyserial ];
      };

      misoc = pkgs.python3Packages.buildPythonPackage {
        name = "misoc";
        src = src-misoc;
        doCheck = false;  # TODO: fix misoc bitrot and re-enable tests
        propagatedBuildInputs = with pkgs.python3Packages; [ jinja2 numpy migen pyserial asyncserial ];
      };

      microscope = pkgs.python3Packages.buildPythonPackage rec {
        pname = "microscope";
        version = "unstable-2020-12-28";
        src = pkgs.fetchFromGitHub {
          owner = "m-labs";
          repo = "microscope";
          rev = "c21afe7a53258f05bde57e5ebf2e2761f3d495e4";
          sha256 = "sha256-jzyiLRuEf7p8LdhmZvOQj/dyQx8eUE8p6uRlwoiT8vg=";
        };
        propagatedBuildInputs = with pkgs.python3Packages; [ pyserial prettytable msgpack migen ];
      };

      cargo-xbuild = rustPlatform.buildRustPackage rec {
        pname = "cargo-xbuild";
        version = "0.6.5";

        src = pkgs.fetchFromGitHub {
          owner = "rust-osdev";
          repo = pname;
          rev = "v${version}";
          sha256 = "18djvygq9v8rmfchvi2hfj0i6fhn36m716vqndqnj56fiqviwxvf";
        };

        cargoSha256 = "13sj9j9kl6js75h9xq0yidxy63vixxm9q3f8jil6ymarml5wkhx8";
      };

      vivadoEnv = pkgs.buildFHSUserEnv {
        name = "vivado-env";
        targetPkgs = vivadoDeps;
      };

      vivado = pkgs.buildFHSUserEnv {
        name = "vivado";
        targetPkgs = vivadoDeps;
        profile = "set -e; source /opt/Xilinx/Vivado/2021.2/settings64.sh";
        runScript = "vivado";
      };

      makeArtiqBoardPackage = { target, variant, buildCommand ? "python -m artiq.gateware.targets.${target} -V ${variant}" }:
        pkgs.stdenv.mkDerivation {
          name = "artiq-board-${target}-${variant}";
          phases = [ "buildPhase" "checkPhase" "installPhase" ];
          cargoDeps = rustPlatform.importCargoLock {
            lockFile = ./artiq/firmware/Cargo.lock;
            outputHashes = {
              "fringe-1.2.1" = "sha256-m4rzttWXRlwx53LWYpaKuU5AZe4GSkbjHS6oINt5d3Y=";
            };
          };
          nativeBuildInputs = [
            (pkgs.python3.withPackages(ps: [ ps.jsonschema migen misoc artiq]))
            rustPlatform.rust.rustc
            rustPlatform.rust.cargo
            pkgs.llvmPackages_14.clang-unwrapped
            pkgs.llvm_14
            pkgs.lld_14
            vivado
            rustPlatform.cargoSetupHook
            cargo-xbuild
          ];
          buildPhase = 
            ''
            ARTIQ_PATH=`python -c "import artiq; print(artiq.__path__[0])"`
            ln -s $ARTIQ_PATH/firmware/Cargo.lock .
            cargoSetupPostUnpackHook
            cargoSetupPostPatchHook
            ${buildCommand}
            '';
          doCheck = true;
          checkPhase =
            ''
            # Search for PCREs in the Vivado output to check for errors
            check_log() {
              grep -Pe "$1" artiq_${target}/${variant}/gateware/vivado.log && exit 1 || true
            }
            check_log "\d+ constraint not met\."
            check_log "Timing constraints are not met\."
            '';
          installPhase =
            ''
            TARGET_DIR=$out
            mkdir -p $TARGET_DIR
            cp artiq_${target}/${variant}/gateware/top.bit $TARGET_DIR
            if [ -e artiq_${target}/${variant}/software/bootloader/bootloader.bin ]
            then cp artiq_${target}/${variant}/software/bootloader/bootloader.bin $TARGET_DIR
            fi
            if [ -e artiq_${target}/${variant}/software/runtime ]
            then cp artiq_${target}/${variant}/software/runtime/runtime.{elf,fbi} $TARGET_DIR
            else cp artiq_${target}/${variant}/software/satman/satman.{elf,fbi} $TARGET_DIR
            fi
            '';
          # don't mangle ELF files as they are not for NixOS
          dontFixup = true;
        };

      openocd-bscanspi = let
        bscan_spi_bitstreams-pkg = pkgs.stdenv.mkDerivation {
          name = "bscan_spi_bitstreams";
          src = pkgs.fetchFromGitHub {
            owner = "quartiq";
            repo = "bscan_spi_bitstreams";
            rev = "01d8f819f15baf9a8cc5d96945a51e4d267ff564";
            sha256 = "1zqv47kzgvbn4c8cr019a6wcja7gn5h1z4kvw5bhpc72fyhagal9";
          };
          phases = ["installPhase"];
          installPhase =
          ''
          mkdir -p $out/share/bscan-spi-bitstreams
          cp $src/*.bit $out/share/bscan-spi-bitstreams
          '';
        };
        # https://docs.lambdaconcept.com/screamer/troubleshooting.html#error-contents-differ
        openocd-fixed = pkgs.openocd.overrideAttrs(oa: {
          version = "unstable-2021-09-15";
          src = pkgs.fetchFromGitHub {
            owner = "openocd-org";
            repo = "openocd";
            rev = "a0bd3c9924870c3b8f428648410181040dabc33c";
            sha256 = "sha256-YgUsl4/FohfsOncM4uiz/3c6g2ZN4oZ0y5vV/2Skwqg=";
            fetchSubmodules = true;
          };
          patches = [
            (pkgs.fetchurl {
              url = "https://git.m-labs.hk/M-Labs/nix-scripts/raw/commit/575ef05cd554c239e4cc8cb97ae4611db458a80d/artiq-fast/pkgs/openocd-jtagspi.diff";
              sha256 = "0g3crk8gby42gm661yxdcgapdi8sp050l5pb2d0yjfic7ns9cw81";
            })
          ];
          nativeBuildInputs = oa.nativeBuildInputs or [] ++ [ pkgs.autoreconfHook269 ];
        });
      in pkgs.buildEnv {
        name = "openocd-bscanspi";
        paths = [ openocd-fixed bscan_spi_bitstreams-pkg ];
      };

      # https://github.com/ashb/sphinx-argparse/issues/5
      sphinx-argparse = pkgs.python3Packages.buildPythonPackage rec {
        pname = "sphinx-argparse";
        version = "0.3.1";
        src = pkgs.python3Packages.fetchPypi {
          inherit pname version;
          sha256 = "82151cbd43ccec94a1530155f4ad34f251aaca6a0ffd5516d7fadf952d32dc1e";
        };
        checkInputs = [ pkgs.python3Packages.pytest ];
        checkPhase =
          ''
          pytest -vv -k "not test_parse_nested and not test_parse_nested_with_alias and not test_parse_groups and not test_action_groups_with_subcommands"
         '';
        propagatedBuildInputs = [ pkgs.python3Packages.sphinx ];
      };
      sphinxcontrib-wavedrom = pkgs.python3Packages.buildPythonPackage rec {
        pname = "sphinxcontrib-wavedrom";
        version = "3.0.2";
        src = pkgs.python3Packages.fetchPypi {
          inherit pname version;
          sha256 = "sha256-ukZd3ajt0Sx3LByof4R80S31F5t1yo+L8QUADrMMm2A=";
        };
        buildInputs = [ pkgs.python3Packages.setuptools_scm ];
        propagatedBuildInputs = (with pkgs.python3Packages; [ wavedrom sphinx xcffib cairosvg ]);
      };
      latex-artiq-manual = pkgs.texlive.combine {
        inherit (pkgs.texlive)
          scheme-basic latexmk cmap collection-fontsrecommended fncychap
          titlesec tabulary varwidth framed fancyvrb float wrapfig parskip
          upquote capt-of needspace etoolbox;
      };
    in rec {
      packages.x86_64-linux = rec {
        inherit (nac3.packages.x86_64-linux) python3-mimalloc;
        inherit qasync openocd-bscanspi artiq;
        inherit migen misoc asyncserial microscope vivadoEnv vivado;
        artiq-board-kc705-nist_clock = makeArtiqBoardPackage {
          target = "kc705";
          variant = "nist_clock";
        };
        inherit sphinx-argparse sphinxcontrib-wavedrom latex-artiq-manual;
        artiq-manual-html = pkgs.stdenvNoCC.mkDerivation rec {
          name = "artiq-manual-html-${version}";
          version = artiqVersion;
          src = self;
          buildInputs = [
            pkgs.python3Packages.sphinx pkgs.python3Packages.sphinx_rtd_theme
            sphinx-argparse sphinxcontrib-wavedrom
          ];
          buildPhase = ''
            export VERSIONEER_OVERRIDE=${artiqVersion}
            export SOURCE_DATE_EPOCH=${builtins.toString self.sourceInfo.lastModified}
            cd doc/manual
            make html
          '';
          installPhase = ''
            cp -r _build/html $out
            mkdir $out/nix-support
            echo doc manual $out index.html >> $out/nix-support/hydra-build-products
          '';
        };
        artiq-manual-pdf = pkgs.stdenvNoCC.mkDerivation rec {
          name = "artiq-manual-pdf-${version}";
          version = artiqVersion;
          src = self;
          buildInputs = [
            pkgs.python3Packages.sphinx pkgs.python3Packages.sphinx_rtd_theme
            sphinx-argparse sphinxcontrib-wavedrom
            latex-artiq-manual
          ];
          buildPhase = ''
            export VERSIONEER_OVERRIDE=${artiq.version}
            export SOURCE_DATE_EPOCH=${builtins.toString self.sourceInfo.lastModified}
            cd doc/manual
            make latexpdf
          '';
          installPhase = ''
            mkdir $out
            cp _build/latex/ARTIQ.pdf $out
            mkdir $out/nix-support
            echo doc-pdf manual $out ARTIQ.pdf >> $out/nix-support/hydra-build-products
          '';
        };
      };

      packages.x86_64-w64-mingw32 = import ./windows { inherit sipyco nac3 artiq-comtools; artiq = self; };

      inherit makeArtiqBoardPackage;

      defaultPackage.x86_64-linux = packages.x86_64-linux.python3-mimalloc.withPackages(ps: [ packages.x86_64-linux.artiq ]);

      devShell.x86_64-linux = pkgs.mkShell {
        name = "artiq-dev-shell";
        buildInputs = [
          (packages.x86_64-linux.python3-mimalloc.withPackages(ps: with packages.x86_64-linux; [ migen misoc artiq ps.paramiko ps.jsonschema microscope ]))
          rustPlatform.rust.rustc
          rustPlatform.rust.cargo
          cargo-xbuild
          pkgs.llvmPackages_14.clang-unwrapped
          pkgs.llvm_14
          pkgs.lld_14
          # use the vivado-env command to enter a FHS shell that lets you run the Vivado installer
          packages.x86_64-linux.vivadoEnv
          packages.x86_64-linux.vivado
          packages.x86_64-linux.openocd-bscanspi
          pkgs.python3Packages.sphinx pkgs.python3Packages.sphinx_rtd_theme
          sphinx-argparse sphinxcontrib-wavedrom latex-artiq-manual
        ];
      };

      hydraJobs = {
        inherit (packages.x86_64-linux) artiq artiq-board-kc705-nist_clock openocd-bscanspi;
        sipyco-msys2-pkg = packages.x86_64-w64-mingw32.sipyco-pkg;
        artiq-comtools-msys2-pkg = packages.x86_64-w64-mingw32.artiq-comtools-pkg;
        artiq-msys2-pkg = packages.x86_64-w64-mingw32.artiq-pkg;
        msys2-repos = packages.x86_64-w64-mingw32.msys2-repos;
        inherit (packages.x86_64-linux) artiq-manual-html artiq-manual-pdf;
      };
    };

  nixConfig = {
    extra-trusted-public-keys = "nixbld.m-labs.hk-1:5aSRVA5b320xbNvu30tqxVPXpld73bhtOeH6uAjRyHc=";
    extra-substituters = "https://nixbld.m-labs.hk";
    extra-sandbox-paths = "/opt";
  };
}