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worker_db: write hdf5 dataset metadata
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parent
bf38fc8b0f
commit
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@ -111,11 +111,12 @@ class DatasetManager:
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self._broadcaster = Notifier(dict())
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self.local = dict()
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self.archive = dict()
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self.metadata = dict()
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self.ddb = ddb
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self._broadcaster.publish = ddb.update
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def set(self, key, value, broadcast=False, persist=False, archive=True):
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def set(self, key, value, metadata, broadcast, persist, archive):
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if persist:
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broadcast = True
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@ -123,7 +124,7 @@ class DatasetManager:
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logger.warning(f"Dataset '{key}' will not be stored. Both 'broadcast' and 'archive' are set to False.")
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if broadcast:
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self._broadcaster[key] = persist, value
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self._broadcaster[key] = persist, value, metadata
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elif key in self._broadcaster.raw_view:
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del self._broadcaster[key]
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@ -131,6 +132,8 @@ class DatasetManager:
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self.local[key] = value
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elif key in self.local:
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del self.local[key]
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self.metadata[key] = metadata
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def _get_mutation_target(self, key):
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target = self.local.get(key, None)
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@ -166,21 +169,30 @@ class DatasetManager:
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self.archive[key] = data
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return data
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def get_metadata(self, key):
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if key in self.metadata:
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return self.metadata[key]
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return self.ddb.get_metadata(key)
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def write_hdf5(self, f):
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datasets_group = f.create_group("datasets")
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for k, v in self.local.items():
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_write(datasets_group, k, v)
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m = self.metadata.get(k, {})
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_write(datasets_group, k, v, m)
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archive_group = f.create_group("archive")
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for k, v in self.archive.items():
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_write(archive_group, k, v)
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m = self.metadata.get(k, {})
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_write(archive_group, k, v, m)
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def _write(group, k, v):
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def _write(group, k, v, m):
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# Add context to exception message when the user writes a dataset that is
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# not representable in HDF5.
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try:
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group[k] = v
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for key, val in m.items():
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group[k].attrs[key] = val
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except TypeError as e:
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raise TypeError("Error writing dataset '{}' of type '{}': {}".format(
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k, type(v), e))
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