When plugged to an adapter, the NIST QC1 hardware can be used with a limited number of TTL channels. The TTL lines are mapped to RTIO channels as follows:
The input only limitation on channels 0 and 1 comes from the QC-DAQ adapter. When the adapter is not used (and physically unplugged from the Papilio Pro board), the corresponding pins on the Papilio Pro can be used as outputs. Do not configure these channels as outputs when the adapter is plugged, as this would cause electrical contention.